docs

Merge github.com:MeasureTransport/MParT #1

	name: docs

	on:
	push:
	branches:
	- main
	- release

	jobs:
	build-docs:
	runs-on: ubuntu-latest
	steps:
	- name: Use Conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: "3.8"
	activate-environment: "test"

	- name: Checkout MParT
	uses: actions/checkout@v1

	- uses: shrink/actions-docker-extract@v1
	id: extract
	with:
	image: quay.io/measuretransport/mpart_examples:latest
	path: /home/bayes/examples/python/.

	- name: Move notebooks into documentation
	run: \|
	mkdir ${{ github.workspace }}/docs/source/tutorials/python
	cp ${{ steps.extract.outputs.destination }}/*.nbconvert.ipynb ${{ github.workspace }}/docs/source/tutorials/python/
	for file in ${{ github.workspace }}/docs/source/tutorials/python/*.nbconvert.ipynb; do mv "${file}" "${file/nbconvert./}"; done

	- name: Install sphinx extensions
	shell: bash -l {0}
	run: conda install -c conda-forge doxygen pygments sphinx sphinx-design breathe pydata-sphinx-theme nbsphinx jupytext pandoc ipykernel nbconvert

	- name: Run CMake
	shell: bash -l {0}
	run: \|
	cd ${{ github.workspace }}
	mkdir build && cd build
	cmake -DKokkos_ENABLE_THREADS=ON -DKokkos_ENABLE_SERIAL=ON -DPYTHON_EXECUTABLE=`which python` -DMPART_BUILD_EXAMPLES=OFF ../

	- name: Build Docs
	shell: bash -l {0}
	run: \|
	cd ${{ github.workspace }} && cd build
	make sphinx

	- name: Push to gh-pages
	uses: peaceiris/[email protected]
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: build/docs/sphinx/

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