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Bump python version to 3.13 #131

Bump python version to 3.13

Bump python version to 3.13 #131

Triggered via pull request November 11, 2024 12:45
@fiona-naughtonfiona-naughton
synchronize #40
py-bump
Status Cancelled
Total duration 7m 37s
Artifacts

gh-ci.yaml

on: pull_request
pylint_check
26s
pylint_check
pypi_check
12s
pypi_check
Matrix: main-tests
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8 errors and 47 warnings
main-tests (ubuntu-latest, 3.13, develop)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
main-tests (windows-latest, 3.11, latest)
Process completed with exit code 1.
main-tests (windows-latest, 3.12, latest)
Process completed with exit code 1.
main-tests (windows-latest, 3.13, develop)
The process 'C:\Users\runneradmin\miniconda3\condabin\mamba.bat' failed with exit code 1
main-tests (windows-latest, 3.10, latest)
Process completed with exit code 1.
main-tests (macOS-latest, 3.13, develop)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
main-tests (windows-latest, 3.12, develop)
Canceling since a higher priority waiting request for 'refs/pull/40/merge-py-bump-GH Actions CI' exists
main-tests (windows-latest, 3.12, develop)
The operation was canceled.
pypi_check
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pylint_check
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
main-tests (ubuntu-latest, 3.13, develop)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.13, develop)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (ubuntu-latest, 3.13, develop)
LibMambaUnsatisfiableError: Encountered problems while solving: - nothing provides mdanalysis 0.15.0 needed by mdanalysistests-0.15.0-py27_0 Could not solve for environment specs The following packages are incompatible ├─ mdanalysistests is installable with the potential options │ ├─ mdanalysistests 0.15.0 would require │ │ └─ mdanalysis 0.15.0 , which does not exist (perhaps a missing channel); │ ├─ mdanalysistests 0.16.0 would require │ │ └─ mdanalysis 0.16.0 , which does not exist (perhaps a missing channel); │ ├─ mdanalysistests 0.16.1 would require │ │ └─ mdanalysis 0.16.1 , which does not exist (perhaps a missing channel); │ ├─ mdanalysistests [0.16.2|0.17.0|...|0.20.1] would require │ │ └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed; │ ├─ mdanalysistests [0.17.0|0.18.0] would require │ │ └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed; │ ├─ mdanalysistests 0.17.0 would require │ │ └─ python 3.6* , which can be installed; │ ├─ mdanalysistests [0.18.0|0.19.0|...|2.0.0] would require │ │ └─ python >=3.6,<3.7.0a0 , which can be installed; │ ├─ mdanalysistests [0.19.2|0.20.1|...|2.1.0] would require │ │ └─ python >=3.7,<3.8.0a0 , which can be installed; │ ├─ mdanalysistests [0.20.1|1.0.0|...|2.2.0] would require │ │ └─ python >=3.8,<3.9.0a0 , which can be installed; │ ├─ mdanalysistests [2.0.0|2.1.0|2.2.0] would require │ │ └─ python >=3.9,<3.10.0a0 , which can be installed; │ ├─ mdanalysistests [2.1.0|2.2.0] would require │ │ └─ python >=3.10,<3.11.0a0 , which can be installed; │ ├─ mdanalysistests [2.2.0|2.3.0] would require │ │ └─ python >=3.8,<=3.10 , which can be installed; │ ├─ mdanalysistests [2.4.1|2.4.2|2.4.3] would require │ │ └─ python >=3.8,<=3.11 , which can be installed; │ ├─ mdanalysistests [2.5.0|2.6.1] would require │ │ └─ python >=3.9,<=3.11 , which can be installed; │ └─ mdanalysistests 2.7.0 would require │ └─ python >=3.9,<=3.12 with the potential options │ ├─ python 3.10.0, which can be installed; │ ├─ python [3.10.1|3.10.10|...|3.10.9], which can be installed; │ ├─ python [3.9.0|3.9.1|...|3.9.9], which can be installed; │ ├─ python 3.11.0, which can be installed; │ ├─ python [3.11.1|3.11.10|...|3.12.0], which can be installed; │ └─ python [3.12.0rc3|3.13.0rc1|3.13.0rc2|3.13.0rc3] would require │ └─ _python_rc, which does not exist (perhaps a missing channel); └─ python 3.13** is not installable because there are no viable options ├─ python [3.12.0rc3|3.13.0rc1|3.13.0rc2|3.13.0rc3], which cannot be installed (as previously explained); └─ python 3.13.0 conflicts with any installable versions previously reported.
main-tests (ubuntu-latest, 3.11, latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.11, latest)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (ubuntu-latest, 3.10, latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.10, latest)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (ubuntu-latest, 3.12, latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.12, latest)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (macOS-latest, 3.11, latest)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.11, latest)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (macOS-latest, 3.10, latest)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.10, latest)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.11, latest)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.11, latest)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (ubuntu-latest, 3.12, develop)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.12, develop)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.12, latest)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.12, latest)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (ubuntu-latest, 3.11, develop)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.11, develop)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (ubuntu-latest, 3.10, develop)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.10, develop)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (macOS-latest, 3.11, develop)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.11, develop)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.13, develop)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.13, develop)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.13, develop)
LibMambaUnsatisfiableError: Encountered problems while solving: - nothing provides _python_rc needed by python-3.12.0rc3-rc3_h2628c8c_1_cpython Could not solve for environment specs The following packages are incompatible \u251c\u2500 mdanalysistests is installable with the potential options \u2502 \u251c\u2500 mdanalysistests [0.19.2|0.20.1|1.0.0|1.1.1|2.0.0] would require \u2502 \u2502 \u2514\u2500 python >=3.6,<3.7.0a0 , which can be installed; \u2502 \u251c\u2500 mdanalysistests [0.19.2|0.20.1|...|2.1.0] would require \u2502 \u2502 \u2514\u2500 python >=3.7,<3.8.0a0 , which can be installed; \u2502 \u251c\u2500 mdanalysistests [0.20.1|1.0.0|...|2.2.0] would require \u2502 \u2502 \u2514\u2500 python >=3.8,<3.9.0a0 , which can be installed; \u2502 \u251c\u2500 mdanalysistests [2.0.0|2.1.0|2.2.0] would require \u2502 \u2502 \u2514\u2500 python >=3.9,<3.10.0a0 , which can be installed; \u2502 \u251c\u2500 mdanalysistests [2.1.0|2.2.0] would require \u2502 \u2502 \u2514\u2500 python >=3.10,<3.11.0a0 , which can be installed; \u2502 \u251c\u2500 mdanalysistests [2.2.0|2.3.0] would require \u2502 \u2502 \u2514\u2500 python >=3.8,<=3.10 , which can be installed; \u2502 \u251c\u2500 mdanalysistests [2.4.1|2.4.2|2.4.3] would require \u2502 \u2502 \u2514\u2500 python >=3.8,<=3.11 , which can be installed; \u2502 \u251c\u2500 mdanalysistests [2.5.0|2.6.1] would require \u2502 \u2502 \u2514\u2500 python >=3.9,<=3.11 , which can be installed; \u2502 \u2514\u2500 mdanalysistests 2.7.0 would require \u2502 \u2514\u2500 python >=3.9,<=3.12 with the potential options \u2502 \u251c\u2500 python 3.10.0, which can be installed; \u2502 \u251c\u2500 python [3.10.1|3.10.10|...|3.10.9], which can be installed; \u2502 \u251c\u2500 python [3.9.0|3.9.1|...|3.9.9], which can be installed; \u2502 \u251c\u2500 python 3.11.0, which can be installed; \u2502 \u251c\u2500 python [3.11.1|3.11.10|...|3.12.0], which can be installed; \u2502 \u2514\u2500 python [3.12.0rc3|3.13.0rc1|3.13.0rc2|3.13.0rc3] would require \u2502 \u2514\u2500 _python_rc, which does not exist (perhaps a missing channel); \u2514\u2500 python 3.13** is not installable because there are no viable options \u251c\u2500 python [3.12.0rc3|3.13.0rc1|3.13.0rc2|3.13.0rc3], which cannot be installed (as previously explained); \u2514\u2500 python 3.13.0 conflicts with any installable versions previously reported.
main-tests (macOS-latest, 3.12, develop)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.12, develop)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.10, latest)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.10, latest)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (macOS-latest, 3.10, develop)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.10, develop)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (macOS-latest, 3.13, develop)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.13, develop)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (macOS-latest, 3.13, develop)
LibMambaUnsatisfiableError: Encountered problems while solving: - nothing provides _python_rc needed by python-3.12.0rc3-rc3_h47c9636_1_cpython Could not solve for environment specs The following packages are incompatible ├─ mdanalysistests is installable with the potential options │ ├─ mdanalysistests 2.2.0 would require │ │ └─ python >=3.10,<3.11.0a0 *_cpython, which can be installed; │ ├─ mdanalysistests 2.2.0 would require │ │ └─ python >=3.8,<3.9.0a0 *_cpython, which can be installed; │ ├─ mdanalysistests 2.2.0 would require │ │ └─ python >=3.9,<3.10.0a0 *_cpython, which can be installed; │ ├─ mdanalysistests [2.2.0|2.3.0] would require │ │ └─ python >=3.8,<=3.10 , which can be installed; │ ├─ mdanalysistests [2.4.1|2.4.2|2.4.3] would require │ │ └─ python >=3.8,<=3.11 , which can be installed; │ ├─ mdanalysistests [2.5.0|2.6.1] would require │ │ └─ python >=3.9,<=3.11 , which can be installed; │ └─ mdanalysistests 2.7.0 would require │ └─ python >=3.9,<=3.12 with the potential options │ ├─ python 3.10.0, which can be installed; │ ├─ python [3.10.1|3.10.10|...|3.10.9], which can be installed; │ ├─ python [3.9.0|3.9.1|...|3.9.9], which can be installed; │ ├─ python [3.10.0|3.9.11|...|3.9.7], which can be installed; │ ├─ python [3.10.10|3.10.11|...|3.11.0], which can be installed; │ ├─ python [3.11.1|3.11.10|...|3.12.0], which can be installed; │ └─ python [3.12.0rc3|3.13.0rc1|3.13.0rc2|3.13.0rc3] would require │ └─ _python_rc, which does not exist (perhaps a missing channel); └─ python 3.13** is not installable because there are no viable options ├─ python [3.12.0rc3|3.13.0rc1|3.13.0rc2|3.13.0rc3], which cannot be installed (as previously explained); └─ python 3.13.0 conflicts with any installable versions previously reported.
main-tests (macOS-latest, 3.12, latest)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.12, latest)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.11, develop)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.11, develop)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.10, develop)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.10, develop)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
main-tests (windows-latest, 3.12, develop)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.12, develop)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)