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Merge pull request #20 from MDAnalysis/documentation #106

Merge pull request #20 from MDAnalysis/documentation

Merge pull request #20 from MDAnalysis/documentation #106

Triggered via push October 25, 2024 01:01
Status Failure
Total duration 10m 17s
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gh-ci.yaml

on: push
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pypi_check
Matrix: main-tests
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pypi_check
Process completed with exit code 1.
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (ubuntu-latest, 3.10, latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.10, latest)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (ubuntu-latest, 3.12, latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.12, latest)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (ubuntu-latest, 3.11, latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.11, latest)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (ubuntu-latest, 3.10, develop)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.10, develop)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (ubuntu-latest, 3.12, develop)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.12, develop)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (ubuntu-latest, 3.11, develop)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (ubuntu-latest, 3.11, develop)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (macOS-latest, 3.10, latest)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.10, latest)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (macOS-latest, 3.11, develop)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.11, develop)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (macOS-latest, 3.10, develop)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.10, develop)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Mambaforge is now deprecated! Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/. If you require Mambaforge, you may pin your installer to one found in https://github.com/conda-forge/miniforge/releases/tag/24.7.1-0
main-tests (windows-latest, 3.11, develop)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.11, develop)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.11, develop)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.11, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, develop)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Mambaforge is now deprecated! Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/. If you require Mambaforge, you may pin your installer to one found in https://github.com/conda-forge/miniforge/releases/tag/24.7.1-0
main-tests (windows-latest, 3.10, latest)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.10, latest)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.10, latest)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.10, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, latest)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (macOS-latest, 3.12, develop)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.12, develop)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (macOS-latest, 3.11, latest)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.11, latest)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Mambaforge is now deprecated! Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/. If you require Mambaforge, you may pin your installer to one found in https://github.com/conda-forge/miniforge/releases/tag/24.7.1-0
main-tests (windows-latest, 3.10, develop)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.10, develop)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.10, develop)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.10, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.10, develop)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
main-tests (macOS-latest, 3.12, latest)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (macOS-latest, 3.12, latest)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Mambaforge is now deprecated! Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/. If you require Mambaforge, you may pin your installer to one found in https://github.com/conda-forge/miniforge/releases/tag/24.7.1-0
main-tests (windows-latest, 3.12, latest)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.12, latest)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.12, latest)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.12, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, latest)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Mambaforge is now deprecated! Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/. If you require Mambaforge, you may pin your installer to one found in https://github.com/conda-forge/miniforge/releases/tag/24.7.1-0
main-tests (windows-latest, 3.11, latest)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.11, latest)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.11, latest)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.11, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, latest)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.11, latest)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
Mambaforge is now deprecated!
Mambaforge is now deprecated! Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/. If you require Mambaforge, you may pin your installer to one found in https://github.com/conda-forge/miniforge/releases/tag/24.7.1-0
main-tests (windows-latest, 3.12, develop)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.12, develop)
'powershell' is not recognized as an internal or external command, operable program or batch file.
main-tests (windows-latest, 3.12, develop)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\cli\main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
main-tests (windows-latest, 3.12, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, develop)
WARNING conda.common.path.windows:_path_to(100): cygpath is not available, fallback to manual path conversion
main-tests (windows-latest, 3.12, develop)
C:\Users\runneradmin\miniconda3\Lib\argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)