Skip to content

Using jupyter notebook on Lassen with OpenCE 1.9.1 conda environment

Jump to bottom
Kevin" Seung Whan Chung edited this page Jun 29, 2024 · 4 revisions

We follow the instruction from this LC CZ confluence page.

  1. Follow OpenCE 1.9.1 installation instruction to install anaconda OpenCE 1.9.1 environment.

  2. Install prerequisites and GPLaSDI, according to the instructions from README.md.

  3. In order to use this OpenCE 1.9.1 environment in jupyter notebook, we follow a variation of JupyterHub and Jupyter Notebook:

# save absolute path to your opence environment
OPENCE_PATH=/absolute/path/to/your/opence/environment

conda activate $OPENCE_PATH
conda install ipykernel
python3 -m ipykernel install --prefix=$OPENCE_PATH --name 'gplasdi_kernel' --display-name 'GPLasDI kernel'
conda deactivate

mkdir -p ~/.local/share/jupyter/kernels
cd ~/.local/share/jupyter/kernels
cp -r $OPENCE_PATH/share/jupyter/kernels/gplasdi_kernel ./
  1. Follow the Orbit and Jupyter Notebook instruction to open jupyter lab on the computing node.
  • This seems to run on a log-in node, so a heavy computation is not recommended.
  • The walltime limit is 30 minutes.
Clone this wiki locally