Releases: LBC-LNBio/KVFinder-web-portal
KVFinder-web portal v1.1.1
The KVFinder-web portal, developed in R Shiny, delivers the major functionalities of the KVFinder-web service, where users can load a target biomolecule, adjust detection parameters, select run modes, and download and visualize results. The web portal provides a simple and interactive way to analyze and visualize cavities. Volumes and areas are shown in an interactive table that can be downloaded in TOML format. A biomolecule viewer, powered by the NGL engine for R, displays the biomolecular structure with its cavities, which can be downloaded in PDB format, and allows various customizations, such as highlighting cavities and displaying interface residues surrounding them.
We provide a publicly available KVFinder-web service at https://kvfinder-web.cnpem.br/ with KVFinder-web portal as the graphical web interface. Besides our publicly available KVFinder-web service, a local web service can also be configured on third-party platforms, such as institutional servers or cloud services, using parKVFinder as a service (SaaS).
What's Changed
- Bump rocker/shiny from 4.2.3 to 4.3.0 by @dependabot in #42
- Update KVFinder-web to v1.1.1 by @jvsguerra, @helder-ribeiro and @zgcarvalho in #46 and #45
Full Changelog: v1.1.0...v1.1.1
Contributors
Assets 2
KVFinder-web portal v1.1.0
The KVFinder-web portal, developed in R Shiny, delivers the major functionalities of the KVFinder-web service, where users can load a target biomolecule, adjust detection parameters, select run modes, and download and visualize results. The web portal provides a simple and interactive way to analyze and visualize cavities. Volumes and areas are shown in an interactive table that can be downloaded in TOML format. A biomolecule viewer, powered by the NGL engine for R, displays the biomolecular structure with its cavities, which can be downloaded in PDB format, and allows various customizations, such as highlighting cavities and displaying interface residues surrounding them.
We provide a publicly available KVFinder-web service at https://kvfinder-web.cnpem.br/ with KVFinder-web portal as the graphical web interface. Besides our publicly available KVFinder-web service, a local web service can also be configured on third-party platforms, such as institutional servers or cloud services, using parKVFinder as a service (SaaS).
What's Changed
- Bump rocker/shiny from 4.2.2 to 4.2.3 by @dependabot in #30
- Update KVFinder-web UI by @jvsguerra in #33
- change ggplot hyd scale to png by @helder-ribeiro in #34
- Update hydropathy and depth scales by @jvsguerra in #35
- task list changes by @helder-ribeiro in #37
- Update website banner by @jvsguerra in #36
- Update interface residue visualization by @helder-ribeiro in #38
- Update KVFinder-web portal to version 1.1.0 by @jvsguerra in #39
- Update Tutorial page by @jvsguerra in #40
- fix bug when cav_rep_list is NULL by @helder-ribeiro in #41
Full Changelog: v1.0.0...v1.1.0
Contributors
Assets 2
KVFinder-web portal v1.0.0
The KVFinder-web portal, developed in R Shiny, delivers the major functionalities of the KVFinder-web service, where users can load a target biomolecule, adjust detection parameters, select run modes, and download and visualize results. The web portal provides a simple and interactive way to analyze and visualize cavities. Volumes and areas are shown in an interactive table that can be downloaded in TOML format. A biomolecule viewer, powered by the NGL engine for R, displays the biomolecular structure with its cavities, which can be downloaded in PDB format, and allows various customizations, such as highlighting cavities and displaying interface residues surrounding them.
We provide a publicly available KVFinder-web service at https://kvfinder-web.cnpem.br/ with KVFinder-web portal as the graphical web interface. Besides our publicly available KVFinder-web service, a local web service can also be configured on third-party platforms, such as institutional servers or cloud services, using parKVFinder as a service (SaaS).
What's Changed
- Update Dockerfile by @helder-ribeiro in #1
- Dev by @helder-ribeiro in #2
- fix bug lig upload by @helder-ribeiro in #3
- Dev by @helder-ribeiro in #6
- Dev by @helder-ribeiro in #7
- Dev by @helder-ribeiro in #8
- create variable to store the url by @helder-ribeiro in #9
- update docker file by @helder-ribeiro in #10
- Dev by @helder-ribeiro in #11
- add shinyWidgets to dockerfile by @helder-ribeiro in #12
- fix url bug by @helder-ribeiro in #13
- fix bug upload pdb by @helder-ribeiro in #16
- New tutorial page by @jvsguerra in #15
- Bump rocker/shiny from 4.1.1 to 4.2.2 by @dependabot in #17
- Dev2 by @helder-ribeiro in #18
- small changes text by @helder-ribeiro in #19
- fix warning by @helder-ribeiro in #20
- Add funding and update documentation by @jvsguerra in #22
- New changes by @helder-ribeiro in #23
- Dev by @helder-ribeiro in #24
- Dev by @helder-ribeiro in #25
- Dev by @helder-ribeiro in #26
- Dev by @helder-ribeiro in #27
- Dev by @helder-ribeiro in #28
- Dev by @helder-ribeiro in #29
New Contributors
- @jvsguerra made their first contribution in #15
- @dependabot made their first contribution in #17
Full Changelog: https://github.com/LBC-LNBio/KVFinder-web-portal/commits/v1.0.0