Skip to content

Commit

Permalink
Update 02-How to compare two germplasm and how to find sequence varie…
Browse files Browse the repository at this point in the history
…nts in the interested region.md
  • Loading branch information
ruobinLiu authored Nov 23, 2020
1 parent 8915fc6 commit 54569c9
Showing 1 changed file with 2 additions and 5 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ questions:
- "How to search for sequence variants between two selected germplasm?"
- "How to view genome within a given region?"
objectives:
- "Providing a step by step demonstration on how to"
keypoints:
- "Providing a step by step demonstration on how to compare two germplasm and how to find sequence varients in an interested region."
keypoints:the
- Log in KnowPulse with your user account before searching.
---

Expand All @@ -25,6 +25,3 @@ The second section of the filter criteria available for the genotype matrix allo
In our example, the region of interest is `LcChr4:1875000-2075000`. To enter this, we place `LcChr4` for the `Sequence Name`, `1875000` for the start position and 2075000 for the end position.
![Screenshot of main code listing](../fig/gmatrix-poly-region-4.png)

## Step #5: (Optionally): Restrict to specific variants.
Say you are interested in a specific set of variants and would like to see that subset. You can enter the specific variant names by expanding the `Additional Filter criteria` section then clicking Search.
![Screenshot of main code listing](../fig/gmatrix-poly-region-5.png)

0 comments on commit 54569c9

Please sign in to comment.