Releases · KarchinLab/open-cravat

03 Oct 17:18

kmoad

2.4.2

Fix to summary widgets. They will no longer use the last run filter when reloading the job without a filter selected.
On the submit page, the annotate button is not fixed to the bottom of the page.
Restrict aiohttp version to <4.0.0 in anticipation of changes to the aiohttp api

Assets 2

10 Aug 17:44

kmoad

2.4.1

Add annotation for Exon Number and End Position in mapper
Fix bug that occurred when using oc module install for a module that was already installed

Assets 4

10 Aug 17:41

kmoad

2.3.1

Fix job database locking issues when quickly refreshing jobs
Set default temporary file encoding to utf-8
Put all job databases in WAL journal mode
Further improve handling of modules with dependencies. Resolve circular dependencies and improve version resolution.
Allow lowercase ref bases in input files. Cast bases to uppercase in results.
Add support for filtering on user created notes.
Remove filtering for certain vcf INFO columns

Assets 2

10 Aug 17:31

kmoad

2.3.0

Add annotation packages. Packages are bundled sets of annotators and filters designed to support common types on analysis
Add metrics gathering. Anonymous metrics are collected and reported to KarchinLab. Metrics include information such as input format type, number of variants, annotators selected, and operating system. No indentifiable information is collected about the user, and no details of variants are reported.
Inform users when installing large (>5 GB) modules through the GUI. Don't install modules if they are bigger than available disk space.
Improve installation of modules with dependencies. Dependency chains longer than 2 are supported.
Fix issues when running annotators which have dependencies
Remove temp files by default in runs submitted through the GUI

Assets 2

10 Aug 17:24

kmoad

2.2.9

Change vcf parsing library to PyVCF3
Change minimum python version to 3.8.x
Conversion for gds format files. Allow converting binary input files.
Fix toggling between and/or in query builder
Improve reporting of errors in the command line, adding new --debug option to all commands.
Cache system config file to reduce disk reads
Improve handling of globs in input filenames
Add new support email address