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GWAS catalog: no output #162

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jwehr618 opened this issue Jun 28, 2023 · 2 comments
Open

GWAS catalog: no output #162

jwehr618 opened this issue Jun 28, 2023 · 2 comments
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@jwehr618
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Hello,

I am trying to work with GWAS catalog and through all the variants I have annotated, I have not seen an output for GWAS catalog. I tried using variants I directly pulled from the catalog as well and still did not get any output. Any help with how to fix this?

Note: I am using hg19 and know that GWAS catalog is in hg38. I am unsure if that could be the reason.

Thanks

@kmoad
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kmoad commented Jul 3, 2023

It looks like the GWAS catalog data is old. We'll update it.

@jasminebro
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@kmoad was the GWAS catalog data updated?

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