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A computational platform for type I modular PKS and NRPS design
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JBEI/clusterCAD
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ClusterCAD: a computational platform for type I modular polyketide synthase design Copyright (c) 2022, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy). All rights reserved. Starting service (connect to HTTP at http://127.0.0.1:8000/): docker-compose up -d Starting service with num_workers celery workers: docker-compose up --scale celery=num_workers Loading PKS data into database: docker-compose exec web /bin/bash -c 'cd pipeline && make clean && make all' Shutting down (restart possible with up -d): docker-compose stop Shut down and delete all containers: docker-compose down Building images: docker-compose build Running commands inside running web container: docker-compose exec web /bin/bash Creating a superuser for /admin: docker-compose exec web python3 manage.py createsuperuser Obtaining a Django shell: docker-compose exec web python3 manage.py shell Running jupyter notebook for development: docker-compose exec web jupyter notebook --no-browser --allow-root --ip 0.0.0.0 --port 8888
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A computational platform for type I modular PKS and NRPS design
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