Publish v2.0.0 release candidate 1

What's Changed

• Merging release 1.0.0 changes back into develop by @davidorme in #252
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #253
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #260
• Fix copyright date by @j-emberton in #255
• Updating xarray by @davidorme in #258
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #265
• Allow P Models to accept an array of kphio values by @davidorme in #263
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #268
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #273
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #275
• Initial draft of new quantum yield module by @davidorme in #267
• Implementation of Flora and PlantFunctionalType by @davidorme in #277
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #280
• Implementation of Community object init and factory methods. by @davidorme in #282
• Fixed incorrect yield value in TModelConst and updated regression tests by @davidorme in #283
• Complete implementation of T model functions by @davidorme in #285
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #287
• Replace use of pandas in pyrealm.demography by @davidorme in #292
• Implementation of the canopy model by @davidorme in #288
• Add Flora helper methods by @davidorme in #296
• Revert "Add Flora helper methods" by @davidorme in #299
• Update traits data structures by @davidorme in #300
• Minor updates to T Model functions and testing by @davidorme in #303
• Add StemAllometry class by @davidorme in #306
• Add StemAllocation class by @davidorme in #308
• Update canopy profile branch with stem allocation changes. by @davidorme in #310
• Add CrownProfile class by @davidorme in #311
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #294
• Add user docs demonstrating demography traits and crown properties by @davidorme in #313
• Fix notebook code formatting by @davidorme in #330
• Move pyrealm_build_data documentation into an autodoc style setup by @davidorme in #331
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #320
• Fastslow initval by @surbhigoel77 in #190
• Revise and document functionality of canopy and crown by @davidorme in #328
• Calculate canopy light extinction and interception by @davidorme in #318
• Updating and systematising NDArray typing by @davidorme in #335
• Revise cohort structure inside community by @davidorme in #340
• Group internal attributes in canopy into data classes by @davidorme in #341
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #339
• Shared base classes for demography classes by @davidorme in #338
• 236 develop pyrealmcoresolar function radiation calc library by @j-emberton in #237
• Fix bug in profiling code and create profiling CI by @MarionBWeinzierl in #346
• Review validation and shapes in demography by @davidorme in #342
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #343
• Upgrade upload-artifact version by @MarionBWeinzierl in #357
• Manual/semi-automatic performance regression checking by @MarionBWeinzierl in #356
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #355
• Adding regression test data for phenology by @davidorme in #360
• Updating mypy in poetry to version 1 by @davidorme in #365

Full Changelog: v1.0.0a5-test...v2.0.0rc1

Version 1.0.0

What's Changed

• Merge release/0.10.1 back into develop. by @davidorme in #80
• added license file by @MarionBWeinzierl in #86
• Fixing pre-commit issues and updating pre-commit config by @davidorme in #93
• Added draft CITATION.cff by @davidorme in #88
• Improved README and new CONTRIBUTING by @davidorme in #91
• Fix doctests by @davidorme in #92
• Adds minimum example to README by @davidorme in #97
• Update pre-commit hooks by @github-actions in #99
• Extend python versions covered to include Python 3.11 by @davidorme in #102
• Update pre-commit hooks by @github-actions in #103
• Update of water density and viscosity functions by @davidorme in #100
• Add docstrings to tests by @davidorme in #104
• Adding coverage reports by @davidorme in #105
• Fixing PR incompatibility pileup. by @davidorme in #106
• Added coverage report output step to GA pytest step by @davidorme in #107
• Update pre-commit hooks by @github-actions in #109
• 56 check requirements and ensure that these are consistent between pyprojecttoml and poetry by @MarionBWeinzierl in #111
• Updated README and code of conduct. by @davidorme in #113
• Update pre-commit hooks by @github-actions in #114
• Update reference links to use alp style. by @davidorme in #115
• Building out better structured data package of golden outputs and example data. by @davidorme in #108
• Bad syntax in developers.md by @davidorme in #116
• Profiling by @a-smith-github in #85
• Update pre-commit hooks by @github-actions in #118
• Update pre-commit hooks by @github-actions in #137
• Split pmodel file by @MarionBWeinzierl in #136
• Update pre-commit hooks by @github-actions in #138
• Update pre-commit hooks by @github-actions in #148
• Update CONTRIBUTING.md by @tztsai in #146
• Updating the information on generating profiling call graph by @surbhigoel77 in #147
• Split the tests directory into unit and regression by @surbhigoel77 in #151
• Update pre-commit hooks by @github-actions in #155
• Add profiling to CI workflow by @tztsai in #156
• Update pyproject.toml by @tztsai in #154
• Update pre-commit hooks by @github-actions in #157
• Create core module by @MarionBWeinzierl in #139
• Update pre-commit hooks by @github-actions in #160
• Add small dataset for profiling by @tztsai in #149
• Implementation of SPLASH 1.0 in pyrealm by @davidorme in #69
• hotfix test_evap.py by @tztsai in #171
• Let flake8 ignore E203 by @tztsai in #176
• Add unit tests for splash by @tztsai in #170
• Draft implementation of new OptimalChi structure by @davidorme in #172
• Update to the latest versions of checkout and setup-python actions by @tztsai in #180
• Fixing missing attribute docstrings in core.calendar by @davidorme in #182
• Profiling of the Splash module by @tztsai in #181
• New subdaily pmodel implementation by @davidorme in #183
• Add code to generate SPLASH golden datasets by @davidorme in #185
• Allowing incomplete days by @davidorme in #194
• Remove outdated FastSlowPModel by @davidorme in #199
• Fix time handling in Splash by @tztsai in #186
• Handle NaNs when calculating max difference in Splash.estimate_initial_soil_moisture by @tztsai in #193
• Use a function eval_poly for polynomial evaluation by @tztsai in #187
• Update profiling/report.py and its documentation by @tztsai in #188
• Setup trusted publishing by @davidorme in #200
• Fix for RTD build environment by @davidorme in #204
• Remove support for Python 3.9 by @davidorme in #202
• Fixing profiling issues by @davidorme in #208
• Fixing profile workflow by @davidorme in #211
• Python version bug in pyrealm_profiling.yaml by @davidorme in #214
• Add unit tests by @surbhigoel77 in #153
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #221
• Switched to pre-commit.ci by @davidorme in #218
• Scaling profiling datasets by @davidorme in #216
• Updating development docs by @davidorme in #212
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #228
• Fixing profiling and comparing profiling implementations by @davidorme in #225
• Baseline data and code for two leaf model by @davidorme in #240
• Simplify the jupyter kernelspec setup by @davidorme in #247
• Rebuild of QA chain using ruff by @davidorme in #220
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #243
• 248 numpy 2 0 migration by @j-emberton in #251
• Updated module import in pmodel unit tests by @surbhigoel77 in #250
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #249
• Release version 1.0.0 by @davidorme in #233

New Contributors

• @MarionBWeinzierl made their first contribution in #86
• @a-smith-github made their first contribution in #85
• @tztsai made their first contribution in #146
• @surbhigoel77 made their first contribution in #147
• @pre-commit-ci made their first contribution in #221
• @j-emberton made their first contribution in #251

Full Changelog: 0.10.1...v1.0.0

v1.0.0a5-test test-pypi-only

What's Changed

• Version 0.10.0 release by @davidorme in #73
• Release 0.10.1 by @davidorme in #79
• Baseline data and code for two leaf model by @davidorme in #240
• Simplify the jupyter kernelspec setup by @davidorme in #247
• Rebuild of QA chain using ruff by @davidorme in #220
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #243
• 248 numpy 2 0 migration by @j-emberton in #251
• Updated module import in pmodel unit tests by @surbhigoel77 in #250
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #249

New Contributors

• @j-emberton made their first contribution in #251

Full Changelog: v1.0.0a4-test...v1.0.0a5-test

Release v1.0.0a4 test-pypi-only

What's Changed

• Fixing profiling issues by @davidorme in #208
• Fixing profile workflow by @davidorme in #211
• Python version bug in pyrealm_profiling.yaml by @davidorme in #214
• Add unit tests by @surbhigoel77 in #153
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #221
• Switched to pre-commit.ci by @davidorme in #218
• Scaling profiling datasets by @davidorme in #216
• Updating development docs by @davidorme in #212
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #228
• Fixing profiling and comparing profiling implementations by @davidorme in #225

New Contributors

• @pre-commit-ci made their first contribution in #221

Full Changelog: v1.0.0a3-test...v1.0.0a4-test

v1.0.0a3-test test-pypi-only

What's Changed

• Merge release/0.10.1 back into develop. by @davidorme in #80
• added license file by @MarionBWeinzierl in #86
• Fixing pre-commit issues and updating pre-commit config by @davidorme in #93
• Added draft CITATION.cff by @davidorme in #88
• Improved README and new CONTRIBUTING by @davidorme in #91
• Fix doctests by @davidorme in #92
• Adds minimum example to README by @davidorme in #97
• Update pre-commit hooks by @github-actions in #99
• Extend python versions covered to include Python 3.11 by @davidorme in #102
• Update pre-commit hooks by @github-actions in #103
• Update of water density and viscosity functions by @davidorme in #100
• Add docstrings to tests by @davidorme in #104
• Adding coverage reports by @davidorme in #105
• Fixing PR incompatibility pileup. by @davidorme in #106
• Added coverage report output step to GA pytest step by @davidorme in #107
• Update pre-commit hooks by @github-actions in #109
• 56 check requirements and ensure that these are consistent between pyprojecttoml and poetry by @MarionBWeinzierl in #111
• Updated README and code of conduct. by @davidorme in #113
• Update pre-commit hooks by @github-actions in #114
• Update reference links to use alp style. by @davidorme in #115
• Building out better structured data package of golden outputs and example data. by @davidorme in #108
• Bad syntax in developers.md by @davidorme in #116
• Profiling by @a-smith-github in #85
• Update pre-commit hooks by @github-actions in #118
• Update pre-commit hooks by @github-actions in #137
• Split pmodel file by @MarionBWeinzierl in #136
• Update pre-commit hooks by @github-actions in #138
• Update pre-commit hooks by @github-actions in #148
• Update CONTRIBUTING.md by @tztsai in #146
• Updating the information on generating profiling call graph by @surbhigoel77 in #147
• Split the tests directory into unit and regression by @surbhigoel77 in #151
• Update pre-commit hooks by @github-actions in #155
• Add profiling to CI workflow by @tztsai in #156
• Update pyproject.toml by @tztsai in #154
• Update pre-commit hooks by @github-actions in #157
• Create core module by @MarionBWeinzierl in #139
• Update pre-commit hooks by @github-actions in #160
• Add small dataset for profiling by @tztsai in #149
• Implementation of SPLASH 1.0 in pyrealm by @davidorme in #69
• hotfix test_evap.py by @tztsai in #171
• Let flake8 ignore E203 by @tztsai in #176
• Add unit tests for splash by @tztsai in #170
• Draft implementation of new OptimalChi structure by @davidorme in #172
• Update to the latest versions of checkout and setup-python actions by @tztsai in #180
• Fixing missing attribute docstrings in core.calendar by @davidorme in #182
• Profiling of the Splash module by @tztsai in #181
• New subdaily pmodel implementation by @davidorme in #183
• Add code to generate SPLASH golden datasets by @davidorme in #185
• Allowing incomplete days by @davidorme in #194
• Remove outdated FastSlowPModel by @davidorme in #199
• Fix time handling in Splash by @tztsai in #186
• Handle NaNs when calculating max difference in Splash.estimate_initial_soil_moisture by @tztsai in #193
• Use a function eval_poly for polynomial evaluation by @tztsai in #187
• Update profiling/report.py and its documentation by @tztsai in #188
• Setup trusted publishing by @davidorme in #200
• Fix for RTD build environment by @davidorme in #204
• Remove support for Python 3.9 by @davidorme in #202

New Contributors

• @MarionBWeinzierl made their first contribution in #86
• @a-smith-github made their first contribution in #85
• @tztsai made their first contribution in #146
• @surbhigoel77 made their first contribution in #147

Full Changelog: 0.10.1...v1.0.0a3-test

v0.10.1

The pyrealm package

Version: 0.10.1
See: https://pypi.org/project/pyrealm/0.10.1/#files

What's Changed

• Merge 0.10.0 release branch back into develop by @davidorme in #74
• Handling np.nan in pyrealm.pmodel.subdaily.memory_effect by @davidorme in #78
• Release 0.10.1 by @davidorme in #79

Full Changelog: 0.10.0...0.10.1