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Revise and document functionality of canopy and crown #328

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Oct 21, 2024
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e3e5769
Initial functionality from light extinction doc draft
davidorme Oct 2, 2024
d260ebe
Moving canopy solver into canopy from crown, adding new canopy attrib…
davidorme Oct 2, 2024
d0f2d72
Isolated the PPA model in its own function, made the canopy solver al…
davidorme Oct 2, 2024
30c7c2b
Merge branch '312-add-user-docs-demonstrating-demography-traits-and-c…
davidorme Oct 2, 2024
53a6c76
docstring updates
davidorme Oct 3, 2024
9c1e31e
Crown doc changes
davidorme Oct 3, 2024
49c0928
Merge branch '315-calculate-light-extinction-interception' into 316-u…
davidorme Oct 3, 2024
a71b384
Updating plot helper function get_crown_xy
davidorme Oct 3, 2024
18a58da
Updating crown.md
davidorme Oct 3, 2024
a16cbe1
Merge branch 'develop' into 315-calculate-light-extinction-interception
davidorme Oct 3, 2024
dcf0af5
Merge branch 'develop' into 316-update-documentation-for-canopy-and-c…
davidorme Oct 3, 2024
4683fbf
Add get_crown_xy example to crown doc
davidorme Oct 3, 2024
1032e64
Merge branch '315-calculate-light-extinction-interception' into 316-u…
davidorme Oct 4, 2024
ffef774
Docstrings and comments
davidorme Oct 5, 2024
7602f6a
Doc updates
davidorme Oct 5, 2024
7f18eb8
Updating jupytext settings
davidorme Oct 7, 2024
a1ad5f0
Testing jupytext settings
davidorme Oct 7, 2024
bb8d3c9
Working through implementation of canopy model with user docs
davidorme Oct 9, 2024
5a56a22
Docs update and some bug catches
davidorme Oct 10, 2024
42d8106
Doc build fixes
davidorme Oct 10, 2024
a57287c
Updating canopy docs
davidorme Oct 11, 2024
9d920b1
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 11, 2024
0339465
Fix mypy issue
davidorme Oct 11, 2024
bd1d9a8
Merge branch '316-update-documentation-for-canopy-and-crown' of https…
davidorme Oct 11, 2024
848a96e
Fixing tests
davidorme Oct 11, 2024
69819e6
Force matplotlib to build font cache early in conf.py
davidorme Oct 11, 2024
81fabc0
Revising calculations and docs for canopy
davidorme Oct 14, 2024
802dc05
Fix test
davidorme Oct 14, 2024
4504b3b
Simple community drawing
davidorme Oct 16, 2024
58b7fb8
Merge branch 'develop' into 316-update-documentation-for-canopy-and-c…
davidorme Oct 17, 2024
3ffd364
Merge branch 'develop' into 316-update-documentation-for-canopy-and-c…
davidorme Oct 18, 2024
6270aee
Link to crown profile attributes
davidorme Oct 21, 2024
55b6f90
Merge branch 'develop' into 316-update-documentation-for-canopy-and-c…
davidorme Oct 21, 2024
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1 change: 1 addition & 0 deletions docs/source/api/constants_api.md
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extension: .md
format_name: myst
format_version: 0.13
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1 change: 1 addition & 0 deletions docs/source/api/core_api.md
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extension: .md
format_name: myst
format_version: 0.13
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1 change: 1 addition & 0 deletions docs/source/api/demography_api.md
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extension: .md
format_name: myst
format_version: 0.13
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language: python
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1 change: 1 addition & 0 deletions docs/source/api/pmodel_api.md
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extension: .md
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format_version: 0.13
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1 change: 1 addition & 0 deletions docs/source/api/splash_api.md
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extension: .md
format_name: myst
format_version: 0.13
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language: python
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1 change: 1 addition & 0 deletions docs/source/api/tmodel_api.md
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extension: .md
format_name: myst
format_version: 0.13
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3 changes: 3 additions & 0 deletions docs/source/conf.py
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Expand Up @@ -12,6 +12,9 @@
from dataclasses import dataclass, field
from datetime import datetime

# Import Matplotlib to avoid this message in notebooks:
# "Matplotlib is building the font cache; this may take a moment."
import matplotlib.pyplot # noqa: F401
import sphinxcontrib.bibtex.plugin
from sphinxcontrib.bibtex.style.referencing import BracketStyle
from sphinxcontrib.bibtex.style.referencing.author_year import AuthorYearReferenceStyle
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1 change: 1 addition & 0 deletions docs/source/development/code_qa_and_typing.md
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1 change: 1 addition & 0 deletions docs/source/development/code_testing.md
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1 change: 1 addition & 0 deletions docs/source/development/documentation.md
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1 change: 1 addition & 0 deletions docs/source/development/github_actions.md
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1 change: 1 addition & 0 deletions docs/source/development/overview.md
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1 change: 1 addition & 0 deletions docs/source/development/profiling_and_benchmarking.md
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1 change: 1 addition & 0 deletions docs/source/development/pyrealm_build_data.md
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1 change: 1 addition & 0 deletions docs/source/development/release_process.md
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1 change: 1 addition & 0 deletions docs/source/index.md
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1 change: 1 addition & 0 deletions docs/source/users/constants.md
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