citation udpates

docs/source/refs.bib

@@ -1,15 +1,14 @@
-@techreport{joshi_plant-fate_2022,
-	title = {Plant-{FATE}: {Predicting} the adaptive responses of biodiverse plant communities using functional-trait evolution},
-	url = {https://meetingorganizer.copernicus.org/EGU22/EGU22-9994.html},
-	language = {en},
-	number = {EGU22-9994},
-	urldate = {2024-09-05},
-	institution = {Copernicus Meetings},
-	author = {Joshi, Jaideep and Prentice, Iain Colin and Brännström, Åke and Singh, Shipra and Hofhansl, Florian and Dieckmann, Ulf},
-	month = mar,
-	year = {2022},
-	doi = {10.5194/egusphere-egu22-9994},
-	annote = {Conference Name: EGU22},
+@article{allen:1996a,
+  title = {Assessing Integrity of Weather Data for Reference Evapotranspiration Estimation},
+  author = {Allen, Richard G.},
+  year = {1996},
+  month = mar,
+  journal = {Journal of irrigation and drainage engineering},
+  volume = {122},
+  number = {2},
+  pages = {97--106},
+  doi = {10.1061/(ASCE)0733-9437(1996)122:2(97)},
+  abstract = {Procedures and guidelines are recommended for assessing integrity, quality, and reasonableness of measured weather data and equipment calibration for automated and electronic agricultural weather stations. The procedures include calculation of hourly and 24-h clear sky envelopes for solar radiation, validation of net radiation measurements using calculation equations, and evaluation of expected trends and relationships between air vapor content and air temperature. The procedures for creating clear sky solar radiation envelopes include equations to account for the effects of atmospheric water vapor content and sun angle. Procedures for adjusting air temperature and air vapor content data are introduced to compensate for the aridity of the weather station environment. All of the guidelines are simple and straightforward, and can serve as preliminary ``filters'' by which to scrutinize weather measurements and as near real-time data flagging procedures for agricultural weather networks.}
 }
 
 @article{sandoval_aridity_nodate,
@@ -215,7 +214,17 @@ @article{depury:1997a
   abstract = {In big-leaf models of canopy photosynthesis, the Rubisco activity per unit ground area is taken as the sum of activities per unit leaf area within the canopy, and electron transport capacity is similarly summed. Such models overestimate rates of photosynthesis and require empirical curvature factors in the response to irradiance. We show that, with any distribution of leaf nitrogen within the canopy (including optimal), the required curvature factors are not constant but vary with canopy leaf area index and leaf nitrogen content. We further show that the underlying reason is the difference between the time-averaged and instantaneous distributions of absorbed irradiance, caused by penetration of sunflecks and the range of leaf angles in canopies. These errors are avoided in models that treat the canopy in terms of a number of layers -- the multi-layer models. We present an alternative to the multi-layer model: by separately integrating the sunlit and shaded leaf fractions of the canopy, a single layered sun/shade model is obtained, which is as accurate and simpler. The model is a scaled version of a leaf model as distinct from an integrative approach.}
 }
 
-@article{Diaz:2016by,
+@article{depury:1997a,
+  title = {Simple Scaling of Photosynthesis from Leaves to Canopies without the Errors of Big-Leaf Models},
+  author = {{de Pury}, G. D. D. and Farquhar, G D},
+  year = {1997},
+  journal = {Plant Cell and Environment},
+  number = {20},
+  pages = {537--557},
+  abstract = {In big-leaf models of canopy photosynthesis, the Rubisco activity per unit ground area is taken as the sum of activities per unit leaf area within the canopy, and electron transport capacity is similarly summed. Such models overestimate rates of photosynthesis and require empirical curvature factors in the response to irradiance. We show that, with any distribution of leaf nitrogen within the canopy (including optimal), the required curvature factors are not constant but vary with canopy leaf area index and leaf nitrogen content. We further show that the underlying reason is the difference between the time-averaged and instantaneous distributions of absorbed irradiance, caused by penetration of sunflecks and the range of leaf angles in canopies. These errors are avoided in models that treat the canopy in terms of a number of layers -- the multi-layer models. We present an alternative to the multi-layer model: by separately integrating the sunlit and shaded leaf fractions of the canopy, a single layered sun/shade model is obtained, which is as accurate and simpler. The model is a scaled version of a leaf model as distinct from an integrative approach.}
+}
+
+@article{diaz:2016a,
   title = {The Global Spectrum of Plant Form and Function},
   author = {D{\'i}az, Sandra and Kattge, Jens and Cornelissen, Johannes H C and Wright, Ian J. and Lavorel, Sandra and Dray, St{\'e}phane and Reu, Bj{\"o}rn and Kleyer, Michael and Wirth, Christian and Prentice, I. Colin and Garnier, Eric and B{\"o}nisch, Gerhard and Westoby, Mark and Poorter, Hendrik and Reich, Peter B and Moles, Angela T and Dickie, John and Gillison, Andrew N and Zanne, Amy E and Chave, J{\'e}r{\^o}me and Wright, S Joseph and Sheremet'ev, Serge N and Jactel, Herv{\'e} and Baraloto, Christopher and Cerabolini, Bruno and Pierce, Simon and Shipley, Bill and Kirkup, Donald and Casanoves, Fernando and Joswig, Julia S and G{\"u}nther, Angela and Falczuk, Valeria and R{\"u}ger, Nadja and Mahecha, Miguel D and Gorn{\'e}, Lucas D},
   year = {2016},
@@ -232,7 +241,20 @@ @article{Diaz:2016by
   local-url = {file://localhost/Users/dorme/References/Library.papers3/Articles/2016/D\%C3\%ADaz/Nature\%202016\%20D\%C3\%ADaz.pdf},
   rating = {0},
   uri = {papers3://publication/doi/10.1038/nature16489},
-  file = {/Users/dorme/Zotero/storage/RGG46LIG/Nature 2016 Díaz.pdf}
+  file = {/Users/je484/Zotero/storage/RGG46LIG/Nature 2016 Díaz.pdf}
+}
+
+@book{Duffie:2013a,
+  title = {Solar {{Engineering}} of {{Thermal Processes}}},
+  author = {Duffie, John A. and Beckman, William A.},
+  year = {2013},
+  month = apr,
+  publisher = {John Wiley \& Sons},
+  abstract = {The updated fourth edition of the "bible" of solar energy theory and applications Over several editions, Solar Engineering of Thermal Processes has become a classic solar engineering text and reference. This revised Fourth Edition offers current coverage of solar energy theory, systems design, and applications in different market sectors along with an emphasis on solar system design and analysis using simulations to help readers translate theory into practice. An important resource for students of solar engineering, solar energy, and alternative energy as well as professionals working in the power and energy industry or related fields, Solar Engineering of Thermal Processes, Fourth Edition features:  Increased coverage of leading-edge topics such as photovoltaics and the design of solar cells and heaters A brand-new chapter on applying CombiSys (a readymade TRNSYS simulation program available for free download) to simulate a solar heated house with solar- heated domestic hot water Additional simulation problems available through a companion website An extensive array of homework problems and exercises},
+  googlebooks = {5uDdUfMgXYQC},
+  isbn = {978-1-118-41541-2},
+  langid = {english},
+  keywords = {Technology & Engineering / Electronics / General,Technology & Engineering / Mechanical,Technology & Engineering / Power Resources / General}
 }
 
 @book{duffie:2013a,
@@ -267,21 +289,37 @@ @article{Farquhar:1980ft
   pmid = {24306196},
   rating = {0},
   uri = {papers3://publication/doi/10.1007/BF00386231},
-  file = {/Users/dorme/Zotero/storage/PGDMWNFK/Planta 1980 Farquhar.pdf;/Users/dorme/Zotero/storage/YNCRDMLJ/Planta 1980 Farquhar.pdf}
+  file = {/Users/je484/Zotero/storage/PGDMWNFK/Planta 1980 Farquhar.pdf;/Users/je484/Zotero/storage/YNCRDMLJ/Planta 1980 Farquhar.pdf}
 }
 
-@article{li_simulation_2014,
-	title = {Simulation of tree-ring widths with a model for primary production, carbon allocation, and growth},
-	volume = {11},
-	url = {https://bg.copernicus.org/articles/11/6711/2014/},
-	doi = {10.5194/bg-11-6711-2014},
-	language = {english},
-	number = {23},
-	journal = {Biogeosciences (Online)},
-	author = {Li, G and Harrison, S P and Prentice, I. C. and Falster, D},
-	year = {2014},
-	pages = {6711--6724},
-	annote = {tex.date-added: 2020-12-01T16:59:12GMT tex.date-modified: 2021-11-11T13:59:21GMT tex.local-url: file://localhost/Users/dorme/References/Library.papers3/Articles/2014/Li/Biogeosciences\%202014\%20Li.pdf tex.rating: 0 tex.read: Yes tex.uri: papers3://publication/doi/10.5194/bg-11-6711-2014},
+@article{farquhar:1982a,
+  title = {On the Relationship between Carbon Isotope Discrimination and the Intercellular Carbon Dioxide Concentration in Leaves},
+  author = {Farquhar, Graham D and O'Leary, Marion H and Berry, Joseph A},
+  year = {1982},
+  journal = {Australian Journal of Plant Physiology},
+  volume = {9},
+  number = {2},
+  pages = {121},
+  issn = {1445-4408},
+  doi = {10.1071/PP9820121},
+  urldate = {2022-05-20},
+  abstract = {Theory is developed to explain the carbon isotopic composition of plants. It is shown how diffusion of gaseous COz can significantly affect carbon isotopic discrimination. The effects on discrimination by diffusion and carboxylation are integrated, yielding a simple relationship between discrimination and the ratio of the intercellular and atmospheric partial pressures of COZ. The effects of dark respiration and photorespiration are also considered, and it is suggested that they have relatively little effect on discrimination other than cia their effects on intercellular p(COz). It is also suggested that various environmental factors such as light, temperature, salinity and drought will also have effects via changes in intercellular p(C0,). A simple method is suggested for assessing water use efficiencies in the field.},
+  langid = {english},
+  file = {/Users/je484/Zotero/storage/8ACJPME5/Farquhar et al. - 1982 - On the Relationship Between Carbon Isotope Discrim.pdf}
+}
+
+@book{Fisher:1975tm,
+  title = {Equation of State of Pure Water and Sea Water},
+  author = {Fisher, F H and Dial Jr, O E},
+  year = {1975},
+  publisher = {Scripps Institution of Oceanography},
+  date-added = {2020-11-30T12:27:10GMT},
+  date-modified = {2021-01-21T15:04:43GMT},
+  local-url = {file://localhost/Users/dorme/References/Library.papers3/Books/1975/Fisher/1975\%20Fisher.pdf},
+  rating = {0},
+  read = {Yes},
+  uri = {papers3://publication/uuid/5D2C2C96-7975-4AB9-8314-A988EFA489FF},
+  file = {/Users/je484/Zotero/storage/3K2X7BU7/1975 Fisher.pdf}
 }
 
 @article{smith_global_2019,
@@ -590,19 +628,12 @@ @article{farquhar_biochemical_1980
 	annote = {tex.affiliation: Department of Environmental Biology, Research School of Biological Sciences, Australian National University, P.O. Box 475, 2601, Canberra City, ACT, Australia. tex.date-added: 2020-12-17T09:47:58GMT tex.date-modified: 2020-12-17T09:49:44GMT tex.local-url: file://localhost/Users/dorme/References/Library.papers3/Articles/1980/Farquhar/Planta\%201980\%20Farquhar.pdf tex.rating: 0 tex.uri: papers3://publication/doi/10.1007/BF00386231},
 }
 
-@article{diaz_global_2016,
-	title = {The global spectrum of plant form and function},
-	volume = {529},
-	url = {http://dx.doi.org/10.1038/nature16489},
-	doi = {10.1038/nature16489},
-	abstract = {Nature 529, 167 (2016). doi:10.1038/nature16489},
-	number = {7585},
-	journal = {Nature},
-	author = {Díaz, Sandra and Kattge, Jens and Cornelissen, Johannes H C and Wright, Ian J. and Lavorel, Sandra and Dray, Stéphane and Reu, Björn and Kleyer, Michael and Wirth, Christian and Prentice, I. Colin and Garnier, Eric and Bönisch, Gerhard and Westoby, Mark and Poorter, Hendrik and Reich, Peter B and Moles, Angela T and Dickie, John and Gillison, Andrew N and Zanne, Amy E and Chave, Jérôme and Wright, S Joseph and Sheremet’ev, Serge N and Jactel, Hervé and Baraloto, Christopher and Cerabolini, Bruno and Pierce, Simon and Shipley, Bill and Kirkup, Donald and Casanoves, Fernando and Joswig, Julia S and Günther, Angela and Falczuk, Valeria and Rüger, Nadja and Mahecha, Miguel D and Gorné, Lucas D},
-	month = jan,
-	year = {2016},
-	pages = {167--171},
-	annote = {Publisher: Nature Publishing Group tex.date-added: 2021-06-14T12:23:21GMT tex.date-modified: 2021-11-11T14:13:27GMT tex.local-url: file://localhost/Users/dorme/References/Library.papers3/Articles/2016/D\%C3\%ADaz/Nature\%202016\%20D\%C3\%ADaz.pdf tex.rating: 0 tex.uri: papers3://publication/doi/10.1038/nature16489},
+@article{lavergne:2022a,
+  title = {A Semi-Empirical Model for Primary Production, Isotopic Discrimination and Competition of {{C3}} and {{C4}} Plants},
+  author = {Lavergne, Ali{\'e}nor and Harrison, Sandy P. and Atsawawaranunt, Kamolphat and Dong, Ning and Prentice, Iain Colin},
+  year = {2022},
+  journal = {Global Ecology and Biogeography (submitted)},
+  file = {/Users/je484/Zotero/storage/I797PRT2/Lavergneetal_GEB.docx}
 }
 
 @article{chen_equation_2008,