Merge branch 'develop' into 236-develop-pyrealmcoresolar-function-rad…

…iation-calc-library
ImperialCollegeLondon · Oct 21, 2024 · dc28fd4 · dc28fd4
2 parents 55131c1 + 34c1f34
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diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -1,12 +1,12 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-merge-conflict
       - id: debug-statements
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.6.8
+    rev: v0.6.9
     hooks:
       # Run the linter.
       - id: ruff

diff --git a/docs/source/api/constants_api.md b/docs/source/api/constants_api.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # The {mod}`~pyrealm.constants` module

diff --git a/docs/source/api/core_api.md b/docs/source/api/core_api.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # The {mod}`~pyrealm.core` module

diff --git a/docs/source/api/demography_api.md b/docs/source/api/demography_api.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # The {mod}`~pyrealm.demography` module

diff --git a/docs/source/api/pmodel_api.md b/docs/source/api/pmodel_api.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # The {mod}`~pyrealm.pmodel` module

diff --git a/docs/source/api/splash_api.md b/docs/source/api/splash_api.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # The {mod}`~pyrealm.splash` module

diff --git a/docs/source/api/tmodel_api.md b/docs/source/api/tmodel_api.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # The {mod}`~pyrealm.tmodel` module

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -12,6 +12,9 @@
 from dataclasses import dataclass, field
 from datetime import datetime
 
+# Import Matplotlib to avoid this message in notebooks:
+# "Matplotlib is building the font cache; this may take a moment."
+import matplotlib.pyplot  # noqa: F401
 import sphinxcontrib.bibtex.plugin
 from sphinxcontrib.bibtex.style.referencing import BracketStyle
 from sphinxcontrib.bibtex.style.referencing.author_year import AuthorYearReferenceStyle
@@ -96,6 +99,7 @@ class MyReferenceStyle(AuthorYearReferenceStyle):
     ("py:class", "numpy._typing._array_like._ScalarType_co"),
     ("py:class", "numpy._typing._generic_alias.ScalarType"),
     ("py:class", "numpy.float32"),
+    ("py:class", "numpy.float64"),
     ("py:class", "numpy.int64"),
     ("py:class", "numpy.timedelta64"),
     ("py:class", "numpy.bool_"),

diff --git a/docs/source/development/code_qa_and_typing.md b/docs/source/development/code_qa_and_typing.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # Code quality and static typing

diff --git a/docs/source/development/code_testing.md b/docs/source/development/code_testing.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # Package testing and profiling

diff --git a/docs/source/development/documentation.md b/docs/source/development/documentation.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # Documentation
@@ -60,6 +71,16 @@ kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 ```
 

diff --git a/docs/source/development/github_actions.md b/docs/source/development/github_actions.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # GitHub Actions

diff --git a/docs/source/development/overview.md b/docs/source/development/overview.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # Developing `pyrealm`

diff --git a/docs/source/development/profiling_and_benchmarking.md b/docs/source/development/profiling_and_benchmarking.md
@@ -5,10 +5,21 @@ jupytext:
     extension: .md
     format_name: myst
     format_version: 0.13
+    jupytext_version: 1.16.4
 kernelspec:
   display_name: Python 3
   language: python
   name: python3
+language_info:
+  codemirror_mode:
+    name: ipython
+    version: 3
+  file_extension: .py
+  mimetype: text/x-python
+  name: python
+  nbconvert_exporter: python
+  pygments_lexer: ipython3
+  version: 3.11.9
 ---
 
 # Profiling and benchmarking