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updated the doc strings for smooth anndata
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Gibbsdavidl committed Jan 4, 2024
1 parent 9e0cdc0 commit 69491dd
Showing 1 changed file with 2 additions and 7 deletions.
9 changes: 2 additions & 7 deletions gssnng/smooth_anndatas.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,12 +13,7 @@ def smooth_anndata(
) -> anndata.AnnData:

"""
gene set scoring (all gene sets in file) with nearest neighbor smoothing of the expression matrix
Improved single cell scoring by:
- smoothing the data matrix
- adding noise to the nearest neighbor smoothing via `samp_neighbors`
- adding noise to the expression data itself (via noise_trials)
nearest neighbor smoothing of the expression matrix
:param adata
anndata.AnnData containing the cells to be scored
Expand All @@ -34,7 +29,7 @@ def smooth_anndata(
:param cores
number of parallel processes to work through groupby groups
:returns: adata with gene set scores in .obs
:returns: a list of adatas with smoothed data
"""

return_data = 1
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