changes on k8s deployment WIP

.dockerignore

@@ -1 +1,4 @@
-*.md
+*.md
+.env
+assets/*
+kubernetes/*

kubernetes/bare-kubernetes/002_connection-details.yaml

@@ -0,0 +1,14 @@
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: connection-details
+data:
+  CELERY_BROKER_URL: "amqp://guest:guest@rabbitmq:5672/"
+  CELERY_RESULT_BACKEND: "db+postgresql://postgres:mysecretpassword@db/omopdb"
+  OMOP_DBMS: "postgresql"
+  OMOP_SERVER: "host.docker.internal"
+  OMOP_PORT: "5432"
+  OMOP_USER: "postgres"
+  OMOP_PASSWORD: "mysecretpassword"
+  OMOP_DATABASE: "omopdb"
+  OMOP_SCHEMA: "omopcdm"

kubernetes/bare-kubernetes/005_ohdsi-api-deployment.yaml

@@ -0,0 +1,60 @@
+#deployment of a api 
+
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: ohdsi-apit
+  labels:
+    app: ohdsi-api
+spec:
+  replicas: 1
+  selector:
+    matchLabels:
+      app: ohdsi-api
+  template:
+    metadata:
+      labels:
+        app: ohdsi-api
+    spec:
+      containers:
+      - name: ohdsi-api
+        image: ohdsi-api:latest
+        imagePullPolicy: IfNotPresent
+        ports:
+        - containerPort: 8080
+        env:
+          - name: OMOP_DBMS
+            valueFrom:
+            configMapKeyRef:
+              name: connection-details
+              key: OMOP_DBMS
+          - name: OMOP_SERVER
+            valueFrom:
+            configMapKeyRef:
+              name: connection-details
+              key: OMOP_SERVER
+          - name: OMOP_PORT
+            valueFrom:
+            configMapKeyRef:
+              name: connection-details
+              key: OMOP_PORT
+          - name: OMOP_USER
+            valueFrom:
+              secretKeyRef:
+                name: omop-secrets
+                key: POSTGRES_USER
+          - name: OMOP_PASSWORD
+            valueFrom:
+              secretKeyRef:
+                name: omop-secrets
+                key: POSTGRES_PASSWORD
+          - name: OMOP_DATABASE
+            valueFrom:
+            configMapKeyRef:
+              name: connection-details
+              key: OMOP_DATABASE
+          - name: OMOP_SCHEMA
+            valueFrom:
+            configMapKeyRef:
+              name: connection-details
+              key: OMOP_SCHEMA

kubernetes/istio/004_omop-secrets.yaml → kubernetes/istio/001_omop-secrets.yaml

@@ -5,4 +5,5 @@ metadata:
   namespace: datamesh
 type: Opaque
 data:
+  POSTGRES_USER: cG9zdGdyZXM= # postgres in base64
   POSTGRES_PASSWORD: bXlzZWNyZXRwYXNzd29yZA== # mysecretpassword in base64

kubernetes/istio/002_connection-details.yaml

@@ -0,0 +1,14 @@
+apiVersion: v1
+kind: ConfigMap
+metadata:
+  name: connection-details
+data:
+  CELERY_BROKER_URL: "amqp://guest:guest@rabbitmq:5672/"
+  CELERY_RESULT_BACKEND: "db+postgresql://postgres:mysecretpassword@db/omopdb"
+  OMOP_DBMS: "postgresql"
+  OMOP_SERVER: "host.docker.internal"
+  OMOP_PORT: "5432"
+  OMOP_USER: "postgres"
+  OMOP_PASSWORD: "mysecretpassword"
+  OMOP_DATABASE: "omopdb"
+  OMOP_SCHEMA: "omopcdm"