Merge pull request #36 from zivy/addressFutureWarning #116
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| name: IBEX Knowledge-Base Utility Code Package Testing | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*.*.*" | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| preliminary_test: # run all pre-commit tests (see .pre-commit-config.yaml) | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Run pre-commit tests | |
| run: | | |
| pip install pre-commit | |
| pre-commit run --all-files | |
| build_test_and_upload: | |
| needs: preliminary_test | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| brew update | |
| brew install pandoc | |
| python -m pip install --upgrade pip | |
| pip install -r requirements_dev.txt | |
| - name: Build install and test package | |
| run: | | |
| python -m build | |
| ls -la dist | |
| pip install dist/ibex_imaging_knowledge_base_utilities-*any.whl | |
| bib2md -h | |
| reagent_resources_csv_2_md_url -h | |
| fluorescent_probes_csv_2_md -h | |
| update_index_md_stats -h | |
| data_dict_glossary_2_contrib_md -h | |
| zenodo_json_2_thewho_md -h | |
| protocols_csv_2_md -h | |
| videos_csv_2_md -h | |
| csv2supporting -h | |
| validate_zenodo_json -h | |
| validate_bibfile -h | |
| validate_basic -h | |
| validate_videos -h | |
| validate_image_resources -h | |
| validate_reagent_resources -h | |
| data_software_csv_2_md -h | |
| python -m pytest -v --tb=short | |
| - name: Upload wheels | |
| if: github.event_name == 'push' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ibex_imaging_python_wheels | |
| path: dist/ibex_imaging_knowledge_base_utilities-*any.whl | |
| github_release: | |
| needs: build_test_and_upload | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| runs-on: macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Prepare release notes | |
| run: | | |
| python create_release_notes.py ${{ github.repository }} ibex_imaging_knowledge_base_utilities ${{ github.ref_name }} | |
| - uses: actions/download-artifact@v4 | |
| id: download | |
| with: | |
| name: ibex_imaging_python_wheels | |
| - name: Release | |
| uses: softprops/action-gh-release@v2 | |
| with: | |
| files: ibex_imaging_knowledge_base_utilities-*any.whl | |
| body_path: release_notes.txt | |