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Expand Up @@ -14,6 +14,25 @@ all cell types in the vertebrate retina,” *bioRxiv*, 2024, doi:
MacDonald](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[2\]
</span><span class="csl-right-inline">A. J. Radtke, I. Anidi, L.
Arakkal, A. Arroyo-Mejias, R. T. Beuschel, K. Börner, C. J. Chu, B.
Clark, M. R. Clatworthy, J. Colautti, J. Croteau, S. Denha, R. Dever, W.
O. Dutra, S. Fritzsche, S. Fullam, M. Y. Gerner, A. Gola, K. J. Gollob,
J. M. Hernandez, J. L. Hor, H. Ichise, Z. Jing, D. Jonigk, E. Kandov, W.
Kastenmüller, J. F. E. Koenig, A. Kothurkar, A. Y. Kreins, I. Lamborn,
Y. Lin, K. L. P. Morais, A. Lunich, J. C. S. Luz, R. B. MacDonald, C.
Makranz, V. I. Maltez, R. V. Moriaty, J. M. Ocampo-Godinez, V. M.
Olyntho, K. Padhan, K. Remmert, N. Richoz, E. C. Schrom, W. Shang, L.
Shi, R. M. Shih, E. Speranza, S. Stierli, S. A. Teichmann, T. Z. Veres,
M. Vierhout, B. T. Wachter, A. K. WadeVallance, M. Williams, N. Zangger,
R. N. Germain, and Z. Yaniv, “The IBEX knowledge-base: Achieving more
together with open science,” *aRxiv*, 2024, doi:
[10.48550/arXiv.2407.19059](https://doi.org/10.48550/arXiv.2407.19059).
<span class="csl-block"> \[Corresponding authors: [Andrea J. Radtke,
Ronald N. Germain, Ziv
Yaniv](mailto:[email protected],[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[3\]
</span><span class="csl-right-inline">A. J. Radtke, E. Postovalova, A.
Varlamova, A. Bagaev, M. Sorokina, O. Kudryashova, M. Meerson, M.
Polyakova, I. Galkin, V. Svekolkin, S. Isaev, D. Wiebe, A. Sharun, A.
Expand All @@ -30,7 +49,7 @@ remodeling in high-risk patients,” *Cancer Cell*, no. 3, 42, pp.
<span class="csl-block"> \[Corresponding authors: [Andrea J.
Radtke](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[3\]
<span class="csl-left-margin">\[4\]
</span><span class="csl-right-inline">C. Y. C. Lee, B. C. Kennedy, N.
Richoz, I. Dean, Z. K. Tuong, F. Gaspal, Z. Li, C. Willis, T. Hasegawa,
S. K. Whiteside, D. A. Posner, G. Carlesso, S. A. Hammond, S. J. Dovedi,
Expand All @@ -43,7 +62,7 @@ no. 1, 2024, doi:
Menna R.
Clatworthy](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[4\]
<span class="csl-left-margin">\[5\]
</span><span class="csl-right-inline">H. Ichise, E. Speranza, F. La
Russa, T. Z. Veres, C. J. Chu, A. Gola, and R. N. Germain, “Rebalancing
viral and immune damage versus tissue repair prevents death from lethal
Expand All @@ -53,7 +72,7 @@ influenza infection,” *bioRxiv*, 2024, doi:
Ronald N.
Germain](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[5\]
<span class="csl-left-margin">\[6\]
</span><span class="csl-right-inline">A. Shapiro, N. W. S. Caballes, R.
N. Vera, B. S. Klein, P. J. Brennan, Y.-F. Wu, and D. L. Wiesner,
“<span class="nocase">Sensitization with Fungal Protease Allergen
Expand All @@ -64,7 +83,7 @@ doi:
<span class="csl-block"> \[Corresponding authors: [Darin L.
Wiesner](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[6\]
<span class="csl-left-margin">\[7\]
</span><span class="csl-right-inline">M. Vierhout, A. Ayoub, P. Ali, V.
Kumaran, S. Naiel, T. Isshiki, J. F. Koenig, M. R. J. Kolb, and K. Ask,
“A novel ex vivo approach for investigating profibrotic macrophage
Expand All @@ -74,7 +93,7 @@ doi:
<span class="csl-block"> \[Corresponding authors: [Kjetil
Ask](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[7\]
<span class="csl-left-margin">\[8\]
</span><span class="csl-right-inline">E. M. Quardokus, D. C. Saunders,
E. McDonough, J. W. Hickey, C. Werlein, C. Surrette, P. Rajbhandari, A.
M. Casals, H. Tian, L. Lowery, E. K. Neumann, F. Björklund, T. V.
Expand All @@ -90,7 +109,7 @@ pp. 1174–1178, 2023, doi:
<span class="csl-block"> \[Corresponding authors: [Andrea J.
Radtke](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[8\]
<span class="csl-left-margin">\[9\]
</span><span class="csl-right-inline">A.-M. Globig, S. Zhao, J.
Roginsky, V. I. Maltez, J. Guiza, N. Avina-Ochoa, M. Heeg, F. Araujo
Hoffmann, O. Chaudhary, J. Wang, G. Senturk, D. Chen, C. O’Connor, S.
Expand All @@ -101,7 +120,7 @@ exhaustion,” *Nature*, vol. 622, no. 7982, pp. 383–392, Oct. 2023, doi:
<span class="csl-block"> \[Corresponding authors: [Susan M.
Kaech](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[9\]
<span class="csl-left-margin">\[10\]
</span><span class="csl-right-inline">J. Gu, A. Iyer, B. Wesley, A.
Taglialatela, G. Leuzzi, S. Hangai, A. Decker, R. Gu, N. Klickstein, Y.
Shuai, K. Jankovic, L. Parker-Burns, Y. Jin, J. Y. Zhang, J. Hong, S.
Expand All @@ -112,15 +131,15 @@ multi-omic phenotypes in cells and tissue,” *bioRxiv*, 2023, doi:
<span class="csl-block"> \[Corresponding authors: [Jellert T.
Gaublomme](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[10\]
<span class="csl-left-margin">\[11\]
</span><span class="csl-right-inline">L. Arakkal, “IBEX: A user-friendly
and open-source solution for high-plex immunostaining,” *Nat Rev
Immunol*, 2023, doi:
[10.1038/s41577-023-00963-w](https://doi.org/10.1038/s41577-023-00963-w).
<span class="csl-block"> \[Corresponding authors: [Leanne
Arakkal](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[11\]
<span class="csl-left-margin">\[12\]
</span><span class="csl-right-inline">N. Yayon, V. R. Kedlian, L.
Boehme, C. Suo, B. Wachter, R. T. Beuschel, O. Amsalem, K. Polanski, S.
Koplev, E. Tuck, E. Dann, J. V. Hulle, S. Perera, T. Putteman, A. V.
Expand All @@ -137,7 +156,7 @@ spatial human thymus cell atlas mapped to a continuous tissue axis,”
Andrea J. Radtke, John C. Marioni, Tom Taghon, Sarah A.
Teichmann](mailto:[email protected],[email protected],[email protected],[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[12\]
<span class="csl-left-margin">\[13\]
</span><span class="csl-right-inline">Q. Xu, P. Milanez-Almeida, A. J.
Martins, A. J. Radtke, K. B. Hoehn, C. Oguz, J. Chen, C. Liu, J. Tang,
G. Grubbs, S. Stein, S. Ramelli, J. Kabat, H. Behzadpour, M. Karkanitsa,
Expand All @@ -154,7 +173,7 @@ vol. 24, no. 1, pp. 186–199, 2023, doi:
Schwartzberg, Kalpana
Manthiram](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[13\]
<span class="csl-left-margin">\[14\]
</span><span class="csl-right-inline">T. Kudo, A. M. Meireles, R.
Moncada, Y. Chen, P. Wu, J. Gould, X. Hu, O. Kornfeld, R. Jesudason, C.
Foo, B. Höckendorf, H. C. Bravo, J. P. Town, R. Wei, A. Rios, V.
Expand All @@ -167,7 +186,7 @@ tissues with PerturbView,” *bioRxiv*, 2023, doi:
<span class="csl-block"> \[Corresponding authors: [Aviv Regev, Eric
Lubeck](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[14\]
<span class="csl-left-margin">\[15\]
</span><span class="csl-right-inline">J. W. Hickey, E. K. Neumann, A. J.
Radtke, J. M. Camarillo, R. T. Beuschel, A. Albanese, E. McDonough, J.
Hatler, A. E. Wiblin, J. Fisher, J. Croteau, E. C. Small, A. Sood, R. M.
Expand All @@ -181,7 +200,7 @@ Methods*, vol. 19, no. 2, pp. 284–295, 2022, doi:
Sinem K.
Saka](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[15\]
<span class="csl-left-margin">\[16\]
</span><span class="csl-right-inline">N. Richoz, Z. K. Tuong, K. W.
Loudon, E. Patiño-Martínez, J. R. Ferdinand, A. Portet, K. R. Bashant,
E. Thevenon, F. Rucci, T. Hoyler, T. Junt, M. J. Kaplan, R. M. Siegel,
Expand All @@ -193,7 +212,7 @@ no. 21, p. e159751, 2022, doi:
Menna R.
Clatworthy](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[16\]
<span class="csl-left-margin">\[17\]
</span><span class="csl-right-inline">A. J. Radtke, C. J. Chu, Z. Yaniv,
L. Yao, J. Marr, R. T. Beuschel, H. Ichise, A. Gola, J. Kabat, B.
Lowekamp, E. Speranza, J. Croteau, N. Thakur, D. Jonigk, J. Davis, J. M.
Expand All @@ -205,7 +224,7 @@ chemical bleaching method for high-content imaging of diverse tissues,”
Ronald N.
Germain](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[17\]
<span class="csl-left-margin">\[18\]
</span><span class="csl-right-inline">A. J. Radtke, E. Postovalova, A.
Varlamova, A. Bagaev, M. Sorokina, O. Kudryashova, M. Meerson, M.
Polyakova, I. Galkin, V. Svekolkin, S. Isaev, G. Perelman, Y. Lozinsky,
Expand All @@ -220,7 +239,7 @@ multiomic atlas of human normal and follicular lymphoma lymph nodes,”
<span class="csl-block"> \[Corresponding authors: [Andrea J.
Radtke](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[18\]
<span class="csl-left-margin">\[19\]
</span><span class="csl-right-inline">E. Madissoon, A. J. Oliver, V.
Kleshchevnikov, A. Wilbrey-Clark, K. Polanski, A. R. Orsi, L. Mamanova,
L. Bolt, N. Richoz, R. Elmentaite, J. P. Pett, N. Huang, P. He, M.
Expand All @@ -234,7 +253,7 @@ lung reveals a novel immune cell survival niche,” *bioRxiv*, 2021, doi:
Kerstin B.
Meyer](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[19\]
<span class="csl-left-margin">\[20\]
</span><span class="csl-right-inline">Z. K. Tuong, K. W. Loudon, B.
Berry, N. Richoz, J. Jones, X. Tan, Q. Nguyen, A. George, S. Hori, S.
Field, A. G. Lynch, K. Kania, P. Coupland, A. Babbage, R. Grenfell, T.
Expand All @@ -247,7 +266,7 @@ p. 110132, 2021, doi:
R.
Clatworthy](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[20\]
<span class="csl-left-margin">\[21\]
</span><span class="csl-right-inline">C. R. Stoltzfus, J. Filipek, B. H.
Gern, B. E. Olin, J. M. Leal, Y. Wu, M. R. Lyons-Cohen, J. Y. Huang, C.
L. Paz-Stoltzfus, C. R. Plumlee, T. Pöschinger, K. B. Urdahl, M. Perro,
Expand All @@ -258,7 +277,7 @@ no. 3, p. 107523, 2020, doi:
<span class="csl-block"> \[Corresponding authors: [Michael Y.
Gerner](mailto:[email protected])\]</span></span>

<span class="csl-left-margin">\[21\]
<span class="csl-left-margin">\[22\]
</span><span class="csl-right-inline">A. Gola, M. G. Dorrington, E.
Speranza, C. Sala, R. M. Shih, A. J. Radtke, H. S. Wong, A. P. Baptista,
J. M. Hernandez, G. Castellani, I. D. C. Fraser, and R. N. Germain,
Expand All @@ -268,7 +287,7 @@ J. M. Hernandez, G. Castellani, I. D. C. Fraser, and R. N. Germain,
<span class="csl-block"> \[Corresponding authors: [Anita Gola, Ronald N.
Germain](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[22\]
<span class="csl-left-margin">\[23\]
</span><span class="csl-right-inline">A. J. Radtke, E. Kandov, B.
Lowekamp, E. Speranza, C. J. Chu, A. Gola, N. Thakur, R. Shih, L. Yao,
Z. R. Yaniv, R. T. Beuschel, J. Kabat, J. Croteau, J. Davis, J. M.
Expand All @@ -281,7 +300,7 @@ vol. 117, no. 52, pp. 33455–33465, 2020, doi:
Ronald N.
Germain](mailto:[email protected],[email protected])\]</span></span>

<span class="csl-left-margin">\[23\]
<span class="csl-left-margin">\[24\]
</span><span class="csl-right-inline">E. Speranza, J. N. Purushotham, J.
R. Port, B. Schwarz, M. Flagg, B. N. Williamson, F. Feldmann, M. Singh,
L. Pérez-Pérez, G. L. Sturdevant, L. M. Roberts, A. Carmody, J. E.
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