Skip to content

Commit

Permalink
Merge pull request #147 from zivy/newContribution0000000311187432
Browse files Browse the repository at this point in the history
Adding contributions from Zhixin Jing ORCID 0000-0003-1118-7432.
  • Loading branch information
zivy authored May 10, 2024
2 parents ba4f21c + 1fa81da commit 55e475a
Show file tree
Hide file tree
Showing 24 changed files with 221 additions and 18 deletions.
5 changes: 5 additions & 0 deletions .zenodo.json
Original file line number Diff line number Diff line change
Expand Up @@ -97,6 +97,11 @@
"name": "Ichise, Hiroshi",
"orcid": "0000-0002-5187-810X"
},
{
"affiliation": "National Institutes of Health",
"name": "Jing, Zhixin",
"orcid": "0000-0003-1118-7432"
},
{
"affiliation": "University Hospital Aachen",
"name": "Jonigk, Danny",
Expand Down
4 changes: 4 additions & 0 deletions data/image_resources.csv
Original file line number Diff line number Diff line change
Expand Up @@ -153,3 +153,7 @@ Phospho_NF-Kappa_B_p105_Unconjugated/FL_FFPE_PhosphoNF-KappaBp105_CST_4808.jpg,"
Iba-1_NA/Mouse_Brain_Tumor_Hochest_Cyan_Iba_Green_Fuji_019-19741.jpg,Mouse Brain Tumor Hochest (Cyan) Iba (Green_Fuji #019-19741),e243fceacf9de423e29bc97537e19af2,['Iba-1_NA/0000-0002-6944-6997.md']
CD4_AF532/CD4_AF532_Thermo_58-0049-42_CD8_AF488_BioLegend_344716.jpg,"Human lymph node: CD4 (cyan, catalog number 58-0049-42) and CD8 (red, catalog number 561525) ",e56f1f54bbd49e429eba4c2cf0b8a9fe,"['CD8_AF488/0000-0003-4379-8967.md', 'CD4_AF532/0000-0003-4379-8967.md']"
CD4_AF700/Human_Metastatic_Lymph_Node_CD4_EpCAM.jpg,"Human lymph node metastatic: CD4 (blue, catalog number 300526) and EpCAM (red, catalog number 324228)",3f0b3658cc378384708e5224782c30db,"['EpCAM_AF594/0000-0003-4379-8967.md', 'CD4_AF700/0000-0003-4379-8967.md']"
B220_AF488/Mouse_LN_B220_cyan_BD_557669_CD3_red_BioLegend_100240.jpg,"Mouse lymph node: B220 (cyan, catalog number 557669) and CD3 (red, catalog number 100240)",70ba1f6cb266c846c2be414648e31960,"['B220_AF488/0000-0003-1118-7432.md','CD3_AF594/0000-0003-1118-7432.md']"
CD35_BV510/Mouse_LN_CD35_yellow_BD_740132_ColIV_blue_ab19808_A-11009.jpg,"Mouse lymph node: CD35 (yellow, catalog number 740132) and Collagen IV (blue, catalog number ab19808 and A-11009)",ceb4fd8cd2cc42201659aa8226b9f07a,"['CD35_BV510/0000-0003-1118-7432.md','Collagen_IV_Unconjugated/0000-0003-1118-7432.md','Rabbit_IgG__H+L__AF532/0000-0003-1118-7432.md']"
CD169_PE/Mouse_LN_CD169_green_BioLegend_142404_Ki67_magenta_BD_561277.jpg,"Mouse lymph node: CD169 (green, catalog number 142404) and Ki-67 (magenta, catalog number 561277)",8a6567cde9020c3f7cf4baa8a32666f2,"['Ki-67_AF700/0000-0003-1118-7432.md','CD169_PE/0000-0003-1118-7432.md']"
PD-1_BV421/Mouse_LN_PD1_cyan_135218_CD11c_magenta_117312.jpg,"Mouse lymph node: PD-1 (cyan, catalog number 135218) and CD11c (magenta, catalog number 117312)",28a7b8aa0b9b5764fe0061fb69312229,"['CD11c_AF647/0000-0003-1118-7432.md','PD-1_BV421/0000-0003-1118-7432.md']"
21 changes: 11 additions & 10 deletions data/reagent_resources.csv

Large diffs are not rendered by default.

22 changes: 22 additions & 0 deletions docs/supporting_material/B220_AF488/0000-0003-1118-7432.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
---
layout: default
---

# Configurations

| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|:------------|:---------------|-----------------:|:------------|:----------|:---------------|:--------------|:----------------------------------|:----------------|:---------------|:------------------|:-------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:--------|
| NA | Primary Antibody | B220 | Mouse | Rat | IgG2a | RA3-6B2 | BD Biosciences | 557669 | AF488 | AB_396781 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967); [0000-0003-1118-7432](https://orcid.org/0000-0003-1118-7432) | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |

# Publications



# Additional Notes

<a name="notes"></a>


| Mouse lymph node: B220 (cyan, catalog number 557669) and CD3 (red, catalog number 100240) |
|:-------:|
| ![](Mouse_LN_B220_cyan_BD_557669_CD3_red_BioLegend_100240.jpg) |
2 changes: 1 addition & 1 deletion docs/supporting_material/B220_AF488/0000-0003-4379-8967.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ layout: default

| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|:------------|:---------------|-----------------:|:------------|:----------|:---------------|:--------------|:----------------------------------|:----------------|:---------------|:------------------|:-------------------------------|:------------------------------|:------------|:-----------------------------------------|:-----------|:--------------------|:--------|
| NA | Primary Antibody | B220 | Mouse | Rat | IgG2a | RA3-6B2 | BD Biosciences | 557669 | AF488 | AB_396781 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |
| NA | Primary Antibody | B220 | Mouse | Rat | IgG2a | RA3-6B2 | BD Biosciences | 557669 | AF488 | AB_396781 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)]; [0000-0003-1118-7432](https://orcid.org/0000-0003-1118-7432) | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |

# Publications

Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
21 changes: 21 additions & 0 deletions docs/supporting_material/CD11c_AF647/0000-0003-1118-7432.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
---
layout: default
---

# Configurations

| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:-----------------|:----------|:------------|:----------|-----------------:|:------------|:----------|:---------------|:--------------|:----------------------------------|:----------------|:---------------|:------------------|:-------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:--------|
| Q9QXH4 | Primary Antibody | CD11c | Mouse | Armenian Hamster | IgG | N418 | BioLegend | 117312 | AF647 | AB_389328 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967); [0000-0003-1118-7432](https://orcid.org/0000-0003-1118-7432) | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |

# Publications



# Additional Notes

<a name="notes"></a>

| Mouse lymph node: PD-1 (cyan, catalog number 135218) and CD11c (magenta, catalog number 117312) |
|:-------:|
| ![](../PD-1_BV421/Mouse_LN_PD1_cyan_135218_CD11c_magenta_117312.jpg) |
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ layout: default
| Q9QXH4 | Primary Antibody | CD11c | Mouse | Armenian Hamster | IgG | N418 | BioLegend | 117312 | AF647 | AB_389328 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Thymus | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | [2](#notes) |
| Q9QXH4 | Primary Antibody | CD11c | Mouse | Armenian Hamster | IgG | N418 | BioLegend | 117312 | AF647 | AB_389328 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lung | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | [1](#notes) |
| Q9QXH4 | Primary Antibody | CD11c | Mouse | Armenian Hamster | IgG | N418 | BioLegend | 117312 | AF647 | AB_389328 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Small Intestine | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | [1](#notes) |
| Q9QXH4 | Primary Antibody | CD11c | Mouse | Armenian Hamster | IgG | N418 | BioLegend | 117312 | AF647 | AB_389328 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | [2](#notes) |
| Q9QXH4 | Primary Antibody | CD11c | Mouse | Armenian Hamster | IgG | N418 | BioLegend | 117312 | AF647 | AB_389328 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)]; [0000-0003-1118-7432](https://orcid.org/0000-0003-1118-7432) | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | [2](#notes) |

# Publications

Expand Down
22 changes: 22 additions & 0 deletions docs/supporting_material/CD169_PE/0000-0003-1118-7432.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
---
layout: default
---

# Configurations

| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|:------------|:----------|-----------------:|:------------|:------------|:---------------|:--------------|:----------------------------------|:----------------|:---------------|:------------------|:-------------------------------|:------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:--------|
| Q62230 | Primary Antibody | CD169 | Mouse | Rat | IgG2a | 3D6.112 | BioLegend | 142404 | PE | AB_10915697 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967); [0000-0003-1118-7432](https://orcid.org/0000-0003-1118-7432) | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |

# Publications



# Additional Notes

<a name="notes"></a>


| Mouse lymph node: CD169 (green, catalog number 142404) and Ki-67 (magenta, catalog number 561277) |
|:-------:|
| ![](Mouse_LN_CD169_green_BioLegend_142404_Ki67_magenta_BD_561277.jpg) |
2 changes: 1 addition & 1 deletion docs/supporting_material/CD169_PE/0000-0003-4379-8967.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ layout: default

| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|:------------|:----------|-----------------:|:------------|:------------|:---------------|:--------------|:----------------------------------|:----------------|:---------------|:------------------|:-------------------------------|:------------------------------|:------------|:-----------------------------------------|:-----------|:--------------------|:------------|
| Q62230 | Primary Antibody | CD169 | Mouse | Rat | IgG2a | 3D6.112 | BioLegend | 142404 | PE | AB_10915697 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |
| Q62230 | Primary Antibody | CD169 | Mouse | Rat | IgG2a | 3D6.112 | BioLegend | 142404 | PE | AB_10915697 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)]; [0000-0003-1118-7432](https://orcid.org/0000-0003-1118-7432) | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |
| Q62230 | Primary Antibody | CD169 | Mouse | Rat | IgG2a | 3D6.112 | BioLegend | 142404 | PE | AB_10915697 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lung | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | [1](#notes) |
| Q62230 | Primary Antibody | CD169 | Mouse | Rat | IgG2a | 3D6.112 | BioLegend | 142404 | PE | AB_10915697 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Spleen | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | [1](#notes) |
| Q62230 | Primary Antibody | CD169 | Mouse | Rat | IgG2a | 3D6.112 | BioLegend | 142404 | PE | AB_10915697 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Thymus | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) [[1](#publications)] | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
22 changes: 22 additions & 0 deletions docs/supporting_material/CD35_BV510/0000-0003-1118-7432.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
---
layout: default
---

# Configurations

| UniProt Accession Number | Reagent Type | Target Name / Protein Biomarker | Target Species | Host Organism | Isotype | Clonality | Vendor | Catalog Number | Conjugate | RRID | Availability | Method | Tissue Preservation | Target Tissue | Tissue State | Detergent | Antigen Retrieval Conditions | Dye Inactivation Conditions | Recommend | Agree | Disagree | Contributor | Notes |
|:---------------------------|:-----------------|:----------------------------------|:-----------------|:----------------|:----------|:------------|:---------------|-----------------:|:------------|:-----------|:---------------|:--------------|:----------------------------------|:----------------|:---------------|:------------------|:-------------------------------|:---------------------------------|:------------|:-------------------------------------------------------------|:-----------|:-------------------------------------------------------------|:--------|
| NA | Primary Antibody | CD35 | Mouse | Rat | IgG2a | 8C12 | BD Biosciences | 740132 | BV510 | AB_2739889 | Stock | IBEX2D Manual | 1:4 Cytofix/Cytoperm Fixed Frozen | Lymph Node | NA | 0.3% Triton-X-100 | NA | 1 mg/ml LiBH4 15 minutes + light | Yes | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967); [0000-0003-1118-7432](https://orcid.org/0000-0003-1118-7432) | NA | [0000-0003-4379-8967](https://orcid.org/0000-0003-4379-8967) | |

# Publications



# Additional Notes

<a name="notes"></a>


| Mouse lymph node: CD35 (yellow, catalog number 740132) and Collagen IV (blue, catalog number ab19808 and A-11009) |
|:-------:|
| ![](Mouse_LN_CD35_yellow_BD_740132_ColIV_blue_ab19808_A-11009.jpg) |
Loading

0 comments on commit 55e475a

Please sign in to comment.