Code

Support providing multi config files#336

Code

Merged

pearsonca merged 53 commits intodevHopkinsIDD/flepiMoP:devfrom multi-configHopkinsIDD/flepiMoP:multi-configCopy head branch name to clipboardOct 30, 2024

+1,018-257

Commits

Commits on Oct 29, 2024

• initial demo for patching configs capability

  pearsonca

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  3a4f797

• add config patching

  pearsonca

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  183c768

• address cleanup comments

  pearsonca

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  d3a6d5d

• Update flepimop/gempyor_pkg/src/gempyor/cli.py

  pearsonca

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  1f7109c

• further pare down tutorial configs

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  184b1fb

• expand cli coverage

  pearsonca

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  aa4c87b

• remove non-used click imports

  pearsonca

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  7107b92

• update tutorial testing

  pearsonca

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  873ab59

• adding internal comments to cli.py

  pearsonca

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  b292b3e

• non-working WIP; issue with (non)scenario parsing

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  8483f1c

• update scenario parsing, test files

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  5319316

• incorporate backwards compat

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  fd6b139

• deal with None cases

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  f20d583

• addressing some tw comments

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  aba6137

• add back in commented out

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• add back in commented out + whitespace

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  e115bd7

• reorder imports in shared cli

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  4855349

• fix scenario parsing issues, re-route gempyor-simulate calls

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  73b8507

• re-add trailing comma

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  2d22ee7

• revert tutorial pruning

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• revert more tutorial pruning

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  abeb2b1

• maybe fix CI?

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  9bfe250

• another attempt to fix dispatch

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  d45c65f

• address cli testing issue

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  23e5f04

• update examples and cli testing

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  70ef139

• prune deprecated, some shared_cli reorg

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  e1feefb

• WIP on kwargs approach to cli [skip ci]

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  5a9f92d

• dynamically generated docstrings

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  5b87d7a

• kwargs-ify parse_config_files

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  59f7815

• Update flepimop/gempyor_pkg/src/gempyor/shared_cli.py

  Show description for bd5a278
  

  pearsonca

  and

  TimothyWillard

  committed
  bd5a278

• kwargs-ify simulate

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  b0a5769

• adding gempyor-simulate deprecation

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  dfa380c

• deprecate gempyor-simulate

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  bbf0377

• stub in parse config [skip ci]

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  62bc7f0

• leverage click.Parameter typecasting / validation

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  5c4bff8

• introduce passing click context if available

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  214f958

• add unit testing for parse config

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  f8e6052

• handle tuple case in shared_cli

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  7014938

• full option testing

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  c9f917e

• apply black formatting [skip ci]

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  0f879fd

• WIP test patch [skip ci]

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  bf58e94

• working patch test

  pearsonca

  committed
  d7beb69

• Update flepimop/gempyor_pkg/src/gempyor/shared_cli.py

  Show description for 558ce4b
  

  pearsonca

  and

  TimothyWillard

  committed
  558ce4b

• Update flepimop/gempyor_pkg/src/gempyor/shared_cli.py

  pearsonca

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  814f8a4

• prune yaml import from test

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  3e6edb3

• docstring generation tweaking

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  6424382

• reconstitute simulate interface [skip ci]

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  96cec5b

• issue warnings for config files with duplicate keys

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  51a4860

• clarify click version requirement and remove string filtering

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  0dd4c59

• correct click version

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  63f2759

• update documentation to remove reference to gempyor-simulate [skip ci]

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  daebcdc

• add multi-config documentation

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  cb91676

• update multi-configs gitbook to give caveat example

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  00591eb