Update test_spatial_groups test config

Add a 'transitions' section to the 'seir' config section to let the `test_spatial_groups` NPIs test pass.
HopkinsIDD · Nov 21, 2024 · 0c1bb46 · 0c1bb46
1 parent dfc2ae3
commit 0c1bb46
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/flepimop/gempyor_pkg/tests/npi/config_test_spatial_group_npi.yml b/flepimop/gempyor_pkg/tests/npi/config_test_spatial_group_npi.yml
@@ -44,6 +44,13 @@ seir:
       value:
         distribution: fixed
         value: 5
+  transitions:
+    - source: ["S", "unvaccinated", "WILD", "age0to17"]
+      destination: ["E", "unvaccinated", "WILD", "age0to17"]
+      rate: [["r1"], ["r2"], ["r3"], ["r4"]]
+      proportional_to: [["S", "unvaccinated", "WILD", "age0to17"], ["E", "unvaccinated", "WILD", "age0to17"]]
+      proportion_exponent: [[1, 1, 1, 1], [1, 1, 1, 1]]
+
 
 seir_modifiers:
   scenarios: