Split ci.yml
into separate actions
#30
Workflow file for this run
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name: flepicommon-ci | |
on: | |
workflow_dispatch: | |
push: | |
paths: | |
- flepimop/R_packages/flepicommon/**/* | |
branches: | |
- main | |
- dev | |
pull_request: | |
paths: | |
- flepimop/R_packages/flepicommon/**/* | |
branches: | |
- main | |
- dev | |
jobs: | |
ci: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
R-version: ["4.3.3"] | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
lfs: true | |
sparse-checkout: | | |
* | |
!documentation/ | |
sparse-checkout-cone-mode: false | |
- name: Setup R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.R-version }} | |
update-rtools: true | |
- name: Install System Dependencies | |
run: sudo apt install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libtiff5-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev | |
- name: Determine R Library Location | |
run: | | |
R_LIBPATH=$( R -s -e "cat(.libPaths()[1L])" | xargs ) | |
echo "R_LIBPATH=$R_LIBPATH" >> $GITHUB_ENV | |
R_LIBPATH_CKSUM=$( echo "$R_LIBPATH" | cksum | cut -d ' ' -f 1 ) | |
echo "R_LIBPATH_CKSUM=$R_LIBPATH_CKSUM" >> $GITHUB_ENV | |
CACHE_DATE=$( date -d "last Sunday" +%Y%m%d ) | |
echo "CACHE_DATE=$CACHE_DATE" >> $GITHUB_ENV | |
- name: R Library Cache | |
uses: actions/cache@v4 | |
with: | |
key: flepicommon-rlibs-${{ runner.os }}-${{ matrix.R-version }}-${{ hashFiles('flepimop/R_packages/flepicommon/DESCRIPTION', 'flepimop/R_packages/flepicommon/NAMESPACE') }}-${{ env.R_LIBPATH_CKSUM }}-${{ env.CACHE_DATE }} | |
path: ${{ env.R_LIBPATH }} | |
- name: Install R Dependencies | |
if: steps.r-library-cache.outputs.cache-hit != 'true' | |
run: | | |
install.packages( | |
"devtools", | |
repos = "https://cloud.r-project.org", | |
) | |
library(devtools) | |
devtools::install_deps( | |
pkg = "flepimop/R_packages/flepicommon", | |
dependencies = TRUE | |
) | |
install.packages("covidcast", repos = "https://cloud.r-project.org") | |
shell: Rscript {0} | |
- name: Install The flepicommon Package | |
run: | | |
if ("flepicommon" %in% installed.packages()[,"Package"]) { | |
devtools::uninstall(pkg = "flepicommon") | |
} | |
devtools::install( | |
pkg = "flepimop/R_packages/flepicommon", | |
args = c(getOption("devtools.install.args"), "--install-tests"), | |
quick = TRUE, | |
dependencies = TRUE, | |
) | |
shell: Rscript {0} | |
- name: Run Tests | |
run: | | |
library(testthat) | |
test_package("flepicommon") | |
shell: Rscript {0} |