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| *.pyc | ||
| *.orig | ||
|
|
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| .idea/ | ||
| temp/ | ||
| build/ | ||
| dist/ | ||
| __pycache__/ |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1 @@ | ||
| Workflow exeuciton simulator with different heuristic (HEFT, PEFT) and evolution (GA, PSO, GSA, SA) algorithms |
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| <?xml version="1.0" encoding="UTF-8"?> | ||
| <!-- generated: 2008-09-24T14:30:56-07:00 --> | ||
| <!-- generated by: shishir [??] --> | ||
| <adag xmlns="http://pegasus.isi.edu/schema/DAX" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pegasus.isi.edu/schema/DAX http://pegasus.isi.edu/schema/dax-2.1.xsd" version="2.1" count="1" index="0" name="test" jobCount="24" fileCount="0" childCount="23"> | ||
| <!-- part 1: list of all referenced files (may be empty) --> | ||
| <!-- part 2: definition of all jobs (at least one) --> | ||
| <job id="ID00000" namespace="Genome" name="fastqSplit_chr21" version="1.0" runtime="103.52"> | ||
| <uses file="chr210.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="446859355"/> | ||
| <uses file="chr21.0.0.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="85534312"/> | ||
| <uses file="chr21.0.1.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="98262176"/> | ||
| <uses file="chr21.0.2.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="80623179"/> | ||
| <uses file="chr21.0.3.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="98592518"/> | ||
| <uses file="chr21.0.4.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="83847170"/> | ||
| </job> | ||
| <job id="ID00001" namespace="Genome" name="filterContams_chr21" version="1.0" runtime="7.01"> | ||
| <uses file="chr21.0.0.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="85534312"/> | ||
| <uses file="chr21.0.0.nocontam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="44066037"/> | ||
| <uses file="chr21.0.0.contam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="41468275"/> | ||
| </job> | ||
| <job id="ID00002" namespace="Genome" name="filterContams_chr21" version="1.0" runtime="8.23"> | ||
| <uses file="chr21.0.1.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="98262176"/> | ||
| <uses file="chr21.0.1.nocontam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="48142335"/> | ||
| <uses file="chr21.0.1.contam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="50119841"/> | ||
| </job> | ||
| <job id="ID00003" namespace="Genome" name="filterContams_chr21" version="1.0" runtime="8.15"> | ||
| <uses file="chr21.0.2.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="80623179"/> | ||
| <uses file="chr21.0.2.nocontam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="38553524"/> | ||
| <uses file="chr21.0.2.contam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="42069655"/> | ||
| </job> | ||
| <job id="ID00004" namespace="Genome" name="filterContams_chr21" version="1.0" runtime="9.25"> | ||
| <uses file="chr21.0.3.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="98592518"/> | ||
| <uses file="chr21.0.3.nocontam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="47435716"/> | ||
| <uses file="chr21.0.3.contam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="51156802"/> | ||
| </job> | ||
| <job id="ID00005" namespace="Genome" name="filterContams_chr21" version="1.0" runtime="11.89"> | ||
| <uses file="chr21.0.4.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="83847170"/> | ||
| <uses file="chr21.0.4.nocontam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="43314524"/> | ||
| <uses file="chr21.0.4.contam.sfq" link="output" register="true" transfer="true" optional="false" type="data" size="40532646"/> | ||
| </job> | ||
| <job id="ID00006" namespace="Genome" name="sol2sanger_chr21" version="1.0" runtime="2.36"> | ||
| <uses file="chr21.0.0.nocontam.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="44066037"/> | ||
| <uses file="chr21.0.0.nocontam.fq" link="output" register="true" transfer="true" optional="false" type="data" size="24613282"/> | ||
| </job> | ||
| <job id="ID00007" namespace="Genome" name="sol2sanger_chr21" version="1.0" runtime="3.54"> | ||
| <uses file="chr21.0.1.nocontam.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="48142335"/> | ||
| <uses file="chr21.0.1.nocontam.fq" link="output" register="true" transfer="true" optional="false" type="data" size="44753970"/> | ||
| </job> | ||
| <job id="ID00008" namespace="Genome" name="sol2sanger_chr21" version="1.0" runtime="3.26"> | ||
| <uses file="chr21.0.2.nocontam.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="38553524"/> | ||
| <uses file="chr21.0.2.nocontam.fq" link="output" register="true" transfer="true" optional="false" type="data" size="24969343"/> | ||
| </job> | ||
| <job id="ID00009" namespace="Genome" name="sol2sanger_chr21" version="1.0" runtime="3.06"> | ||
| <uses file="chr21.0.3.nocontam.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="47435716"/> | ||
| <uses file="chr21.0.3.nocontam.fq" link="output" register="true" transfer="true" optional="false" type="data" size="36701822"/> | ||
| </job> | ||
| <job id="ID00010" namespace="Genome" name="sol2sanger_chr21" version="1.0" runtime="5.02"> | ||
| <uses file="chr21.0.4.nocontam.sfq" link="input" register="true" transfer="true" optional="false" type="data" size="43314524"/> | ||
| <uses file="chr21.0.4.nocontam.fq" link="output" register="true" transfer="true" optional="false" type="data" size="37310027"/> | ||
| </job> | ||
| <job id="ID00011" namespace="Genome" name="fastq2bfq_chr21" version="1.0" runtime="4.25"> | ||
| <uses file="chr21.0.0.nocontam.fq" link="input" register="true" transfer="true" optional="false" type="data" size="24613282"/> | ||
| <uses file="chr21.0.0.nocontam.bfq" link="output" register="true" transfer="true" optional="false" type="data" size="6918721"/> | ||
| </job> | ||
| <job id="ID00012" namespace="Genome" name="fastq2bfq_chr21" version="1.0" runtime="5.91"> | ||
| <uses file="chr21.0.1.nocontam.fq" link="input" register="true" transfer="true" optional="false" type="data" size="44753970"/> | ||
| <uses file="chr21.0.1.nocontam.bfq" link="output" register="true" transfer="true" optional="false" type="data" size="10323313"/> | ||
| </job> | ||
| <job id="ID00013" namespace="Genome" name="fastq2bfq_chr21" version="1.0" runtime="4.03"> | ||
| <uses file="chr21.0.2.nocontam.fq" link="input" register="true" transfer="true" optional="false" type="data" size="24969343"/> | ||
| <uses file="chr21.0.2.nocontam.bfq" link="output" register="true" transfer="true" optional="false" type="data" size="5956867"/> | ||
| </job> | ||
| <job id="ID00014" namespace="Genome" name="fastq2bfq_chr21" version="1.0" runtime="4.72"> | ||
| <uses file="chr21.0.3.nocontam.fq" link="input" register="true" transfer="true" optional="false" type="data" size="36701822"/> | ||
| <uses file="chr21.0.3.nocontam.bfq" link="output" register="true" transfer="true" optional="false" type="data" size="9015905"/> | ||
| </job> | ||
| <job id="ID00015" namespace="Genome" name="fastq2bfq_chr21" version="1.0" runtime="5.16"> | ||
| <uses file="chr21.0.4.nocontam.fq" link="input" register="true" transfer="true" optional="false" type="data" size="37310027"/> | ||
| <uses file="chr21.0.4.nocontam.bfq" link="output" register="true" transfer="true" optional="false" type="data" size="9039432"/> | ||
| </job> | ||
| <job id="ID00016" namespace="Genome" name="map_chr21" version="1.0" runtime="2830.54"> | ||
| <uses file="chr21.BS.bfa" link="input" register="true" transfer="true" optional="false" type="data" size="1249174122"/> | ||
| <uses file="chr21.0.0.nocontam.bfq" link="input" register="true" transfer="true" optional="false" type="data" size="6918721"/> | ||
| <uses file="chr21.0.0.nocontam.map" link="output" register="true" transfer="true" optional="false" type="data" size="7520348"/> | ||
| </job> | ||
| <job id="ID00017" namespace="Genome" name="map_chr21" version="1.0" runtime="3196.40"> | ||
| <uses file="chr21.BS.bfa" link="input" register="true" transfer="true" optional="false" type="data" size="1249174122"/> | ||
| <uses file="chr21.0.1.nocontam.bfq" link="input" register="true" transfer="true" optional="false" type="data" size="10323313"/> | ||
| <uses file="chr21.0.1.nocontam.map" link="output" register="true" transfer="true" optional="false" type="data" size="11220992"/> | ||
| </job> | ||
| <job id="ID00018" namespace="Genome" name="map_chr21" version="1.0" runtime="2425.31"> | ||
| <uses file="chr21.BS.bfa" link="input" register="true" transfer="true" optional="false" type="data" size="1249174122"/> | ||
| <uses file="chr21.0.2.nocontam.bfq" link="input" register="true" transfer="true" optional="false" type="data" size="5956867"/> | ||
| <uses file="chr21.0.2.nocontam.map" link="output" register="true" transfer="true" optional="false" type="data" size="6474855"/> | ||
| </job> | ||
| <job id="ID00019" namespace="Genome" name="map_chr21" version="1.0" runtime="3623.08"> | ||
| <uses file="chr21.BS.bfa" link="input" register="true" transfer="true" optional="false" type="data" size="1249174122"/> | ||
| <uses file="chr21.0.3.nocontam.bfq" link="input" register="true" transfer="true" optional="false" type="data" size="9015905"/> | ||
| <uses file="chr21.0.3.nocontam.map" link="output" register="true" transfer="true" optional="false" type="data" size="9799896"/> | ||
| </job> | ||
| <job id="ID00020" namespace="Genome" name="map_chr21" version="1.0" runtime="4062.96"> | ||
| <uses file="chr21.BS.bfa" link="input" register="true" transfer="true" optional="false" type="data" size="1249174122"/> | ||
| <uses file="chr21.0.4.nocontam.bfq" link="input" register="true" transfer="true" optional="false" type="data" size="9039432"/> | ||
| <uses file="chr21.0.4.nocontam.map" link="output" register="true" transfer="true" optional="false" type="data" size="9825469"/> | ||
| </job> | ||
| <job id="ID00021" namespace="Genome" name="mapMerge_chr21" version="1.0" runtime="17.23"> | ||
| <uses file="chr21.0.0.nocontam.map" link="input" register="true" transfer="true" optional="false" type="data" size="7520348"/> | ||
| <uses file="chr21.0.1.nocontam.map" link="input" register="true" transfer="true" optional="false" type="data" size="11220992"/> | ||
| <uses file="chr21.0.2.nocontam.map" link="input" register="true" transfer="true" optional="false" type="data" size="6474855"/> | ||
| <uses file="chr21.0.3.nocontam.map" link="input" register="true" transfer="true" optional="false" type="data" size="9799896"/> | ||
| <uses file="chr21.0.4.nocontam.map" link="input" register="true" transfer="true" optional="false" type="data" size="9825469"/> | ||
| <uses file="chr21.nocontam.map" link="output" register="true" transfer="true" optional="false" type="data" size="42303358"/> | ||
| <uses file="chr21.nocontam.map.zr" link="output" register="true" transfer="true" optional="false" type="data" size="1594189"/> | ||
| <uses file="chr21.nocontam.map.vm" link="output" register="true" transfer="true" optional="false" type="data" size="173647"/> | ||
| </job> | ||
| <job id="ID00022" namespace="Genome" name="maqindex_chr21" version="1.0" runtime="0.05"> | ||
| <uses file="chr21.nocontam.map" link="input" register="true" transfer="true" optional="false" type="data" size="42303358"/> | ||
| <uses file="chr21.nocontam.chr.map" link="output" register="true" transfer="true" optional="false" type="data" size="641552"/> | ||
| </job> | ||
| <job id="ID00023" namespace="Genome" name="pileup_chr21" version="1.0" runtime="1375.22"> | ||
| <uses file="chr21.BSnull.bfa" link="input" register="true" transfer="true" optional="false" type="data" size="1249174122"/> | ||
| <uses file="chr21.nocontam.chr.map" link="input" register="true" transfer="true" optional="false" type="data" size="641552"/> | ||
| <uses file="chr21.nocontam.chr.pileup" link="output" register="true" transfer="true" optional="false" type="data" size="3795582"/> | ||
| </job> | ||
| <!-- part 3: list of control-flow dependencies (may be empty) --> | ||
| <child ref="ID00001"> | ||
| <parent ref="ID00000"/> | ||
| </child> | ||
| <child ref="ID00002"> | ||
| <parent ref="ID00000"/> | ||
| </child> | ||
| <child ref="ID00003"> | ||
| <parent ref="ID00000"/> | ||
| </child> | ||
| <child ref="ID00004"> | ||
| <parent ref="ID00000"/> | ||
| </child> | ||
| <child ref="ID00005"> | ||
| <parent ref="ID00000"/> | ||
| </child> | ||
| <child ref="ID00006"> | ||
| <parent ref="ID00001"/> | ||
| </child> | ||
| <child ref="ID00007"> | ||
| <parent ref="ID00002"/> | ||
| </child> | ||
| <child ref="ID00008"> | ||
| <parent ref="ID00003"/> | ||
| </child> | ||
| <child ref="ID00009"> | ||
| <parent ref="ID00004"/> | ||
| </child> | ||
| <child ref="ID00010"> | ||
| <parent ref="ID00005"/> | ||
| </child> | ||
| <child ref="ID00011"> | ||
| <parent ref="ID00006"/> | ||
| </child> | ||
| <child ref="ID00012"> | ||
| <parent ref="ID00007"/> | ||
| </child> | ||
| <child ref="ID00013"> | ||
| <parent ref="ID00008"/> | ||
| </child> | ||
| <child ref="ID00014"> | ||
| <parent ref="ID00009"/> | ||
| </child> | ||
| <child ref="ID00015"> | ||
| <parent ref="ID00010"/> | ||
| </child> | ||
| <child ref="ID00016"> | ||
| <parent ref="ID00011"/> | ||
| </child> | ||
| <child ref="ID00017"> | ||
| <parent ref="ID00012"/> | ||
| </child> | ||
| <child ref="ID00018"> | ||
| <parent ref="ID00013"/> | ||
| </child> | ||
| <child ref="ID00019"> | ||
| <parent ref="ID00014"/> | ||
| </child> | ||
| <child ref="ID00020"> | ||
| <parent ref="ID00015"/> | ||
| </child> | ||
| <child ref="ID00021"> | ||
| <parent ref="ID00020"/> | ||
| <parent ref="ID00016"/> | ||
| <parent ref="ID00017"/> | ||
| <parent ref="ID00018"/> | ||
| <parent ref="ID00019"/> | ||
| </child> | ||
| <child ref="ID00022"> | ||
| <parent ref="ID00021"/> | ||
| </child> | ||
| <child ref="ID00023"> | ||
| <parent ref="ID00022"/> | ||
| </child> | ||
| </adag> |
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