Merge pull request #15 from bernt-matthias/topic/if-pull

make pulling container optional
Helmholtz-UFZ · Aug 7, 2023 · 82ae2fa · 82ae2fa
2 parents 5c71b60 + 3da19ca
commit 82ae2fa
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Showing 2 changed files with 6 additions and 3 deletions.
diff --git a/.github/workflows/pr.yaml b/.github/workflows/pr.yaml
@@ -318,8 +318,11 @@ jobs:
       run: ln -s $(which apptainer) $(dirname apptainer)/singularity
     - name: Install containers
       run: |
-        singularity pull --dir /tmp docker://continuumio/anaconda3
-        singularity pull --dir /tmp docker://rocker/tidyverse
+        echo "${{ needs.setup.outputs.repository-list }}" > repository_list.txt
+        if grep -q scripting repository_list.txt; then
+          singularity pull --dir /tmp docker://continuumio/anaconda3
+          singularity pull --dir /tmp docker://rocker/tidyverse
+        fi
 
     - name: Planemo test
       uses: galaxyproject/planemo-ci-action@v1

diff --git a/tools/longorf/longORF.xml b/tools/longorf/longORF.xml
@@ -1,4 +1,4 @@
-<tool id="longORF" name="Obtain longest ORFs" version="0.2.0">
+<tool id="longORF" name="Obtain longest ORFs" version="0.3.0">
     <description> in six-frame translations</description>
     <command><![CDATA[
         python $__tool_directory__/getLongestORF.py $input $output_longestORF $output_ORFs