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Examples
Nils Hoffmann edited this page Dec 13, 2022
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| Name: | MTBLS263 example: Summary, Features, Evidence |
| Description: | Output inspired by Progenesis QI |
| Link: | MTBLS263.mztab |
| Contributor: | Joel M. Rein: Wellcome Sanger Institute, UK |
| Name: | GCxGC-MS example: Summary, Features, Evidence |
| Description: | Basic proof-of concept for derivatized metabolites. |
| Link: | gcxgc-ms-example.mztab |
| Contributor: | Nils Hoffmann: Leibniz Insitut für Analytische Wissenschaften-ISAS e.V.-, Dortmund, and others. |
| Name: | LDA2 StandardMix (-) lipid position example: Summary, Features, Evidence |
| Description: | Standard lipid mix, negative mode, lipid position level |
| Link: | StandardMix_negative_exportPositionLevel.mzTab |
| Contributor: | Jürgen Hartler: Institute of Computational Biotechnology, Graz University of Technology |
| Name: | LDA2 StandardMix (+) lipid position example: Summary, Features, Evidence |
| Description: | Standard lipid mix, positive mode, lipid position level |
| Link: | StandardMix_positive_exportPositionLevel.mzTab |
| Contributor: | Jürgen Hartler: Institute of Computational Biotechnology, Graz University of Technology |
| Name: | LDA2 StandardMix (-) lipid species example: Summary, Features, Evidence |
| Description: | Standard lipid mix, negative mode, lipid position level |
| Link: | StandardMix_negative_exportSpeciesLevel.mzTab |
| Contributor: | Jürgen Hartler: Institute of Computational Biotechnology, Graz University of Technology |
| Name: | LDA2 StandardMix (+) lLipid species example: Summary, Features, Evidence |
| Description: | Standard lipid mix, positive mode, lipid species level |
| Link: | StandardMix_positive_exportSpeciesLevel.mzTab |
| Contributor: | Jürgen Hartler: Institute of Computational Biotechnology, Graz University of Technology |
| Name: | Lipidomics manual example: Summary, Features, Evidence |
| Description: | Ceramides, positive mode, lipid species / subspecies level |
| Link: | lipidomics-example.mzTab |
| Contributor: | Nils Hoffmann: Leibniz Insitut für Analytische Wissenschaften-ISAS e.V.-, Dortmund |
| Name: | LDA2 Large lipidomics example, Mouse: Summary, Features, Evidence |
| Description: | Sample of biological origin, specific tissue, negative mode, lipid species / subspecies level |
| Link: | MouseLiver_negative.mzTab |
| Contributor: | Jürgen Hartler: Institute of Computational Biotechnology, Graz University of Technology |
| Name: | MS-DIAL GC-MS, Arabidopsis: Summary, Features, Evidence |
| Description: | GC-MS TMS-Metabolomics Arabidopsis thaliana Shoots |
| Link: | gcms_tms_height_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-IMS-MS Height, Mouse: Summary, Features, Evidence |
| Description: | LC-MS(Ionmobility,PASEF) mouse tissues lipidomics using precursor peak height |
| Link: | lcimmsms_dda_lipid_height_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-IMS-MS SPLASH, Mouse: Summary, Features, Evidence |
| Description: | LC-MS(Ionmobility,PASEF) mouse tissues lipidomics using semi-quantitative values by SPLASH internal standard |
| Link: | lcimmsms_dda_lipid_splashquant_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-MS DDA Area, Algae: Summary, Features, Evidence |
| Description: | LC-MS(DDA) Algae lipidmics using precursor EIC peak area |
| Link: | lcmsms_dda_lipid_area_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-MS DDA Height, Wine: Summary, Features, Evidence |
| Description: | LC-MS (DDA) wine hydrophilic metabolomics using precursor peak height |
| Link: | lcmsms_dda_hydrophilic_height_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-MS DDA ISTD, Wine: Summary, Features, Evidence |
| Description: | LC-MS (DDA) wine hydrophilic metabolomics using relative value normalized by internal standard (use SML ID 2195(Kaempferol)) |
| Link: | lcmsms_dda_hydrophilic_isnorm_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-MS DIA/Swath Height, Algae: Summary, Features, Evidence |
| Description: | LC-MS(DIA,SWATH) Algae lipidomics using precursor peak height |
| Link: | lcmsms_swath_lipid_height_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-MS DDA Height, Mouse: Summary, Features, Evidence |
| Description: | LC-MS(DDA) mouse tissues lipidomics using precursor peak height |
| Link: | lcmsms_dda_lipid_height_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | MS-DIAL LC-MS DDA SPLASH, Mouse: Summary, Features, Evidence |
| Description: | LC-MS(DDA) mouse tissues lipidomics using semi-quantitative values by SPLASH internal standard |
| Link: | lcmsms_dda_lipid_splashquant_mzTab.mztab |
| Contributor: | Mikiko Takahashi: RIKEN Center for Sustainable Resource Science, Hiroshi Tsugawa: RIKEN Center for Sustainable Resource Science/RIKEN Center for Integrative Medical Science |
| Name: | SILAC example: Summary Quantification report |
| Description: | (hand crafted) Report of a minimal "Summary Quantification report" SILAC experiment, quantification on 2 study variables (control/treatment) reported. |
| Link: | SILAC_SQ.mzTab |
| Name: | iTRAQ example: Summary Quantification report |
| Description: | (hand crafted) Report of a minimal Summary Quantification report" iTRAQ experiment, quantification on 4 study variables (t=0, t=1, t=2, t=3) reported, identifications reported. |
| Link: | iTRAQ_SQI.mzTab |
| Name: | Label-free example: Summary Quantification report |
| Description: | (hand crafted) Report of a minimal "Summary Quantification report" label free experiment, quantification on 2 study variables (control/treatment) reported, identifications reported. |
| Link: | labelfree_SQI.mzTab |
| Name: | SILAC example: Complete Quantification report |
| Description: | (hand crafted) Report of a minimal "Complete Quantification report" SILAC experiment, quantification on 2 study variables (control/treatment), 3+3 assays (replicates) reported, identifications reported. |
| Link: | SILAC_CQI.mzTab |
| Name: | iTRAQ example: Complete Quantification report |
| Description: | (hand crafted) Report of a minimal "Complete Quantification report" iTRAQ experiment, quantification on 4 study variables (t=0, t=1, t=2, t=3), 4*3 assays (3 replicate experiments) reported, identifications reported. |
| Link: | iTRAQ_CQI.mzTab |
| Name: | Label-free example: Complete Quantification report |
| Description: | (hand crafted) Report of a minimal "Complete Quantification report" label free experiment, quantification on 2 study variables (control/treatment), 3+3 assays (replicates) reported, identifications reported. |
| Link: | labelfree_CQI.mzTab |
| Name: | PRIDE XML experiment 16649 |
| Description: | file generated using the mztab-exporter (converted PRIDE experiment accession 16649) containing iTRAQ data. |
| Link: | PRIDE_Exp_Complete_Ac_16649.xml-mztab.txt |
| Name: | PRIDE XML experiment 1643 |
| Description: | file generated using the mztab-exporter (converted PRIDE experiment accession 1643) containing peptide and protein identification data. |
| Link: | PRIDE_Exp_Complete_Ac_1643.xml-mztab.txt |
| Name: | Lipidomics example: complete quantification report |
| Description: | File generated LDA mzTab export for small molecules. Report of a "Complete Quanification report" lipidomics experiment for the lipid class TG. Quantification on 3 study variables (HFD/FED/FAS), 6+6+6 assays (biological replicates) reported, identifications reported. The analysis contains lipid extracts from lipid droplets of mouse hepatocytes. Study variable (feeding conditions): HFD = high fat diet; FED = normal diet and fed before sacrifice; FAS = normal diet and fasted before sacrifice. |
| Link: | lipidomics-HFD-LD-study-TG.mzTab |
| Name: | Lipidomics example 2 |
| Description: | File generated LDA mzTab export for small molecules. Report of a "Complete Quanification report" lipidomics experiment for the lipid classes SM, PE, PC, LPC, DG, PS. Quantification on 3 study variables (HFD/FED/FAS), 6+6+6 assays (biological replicates) reported, identifications reported. The analysis contains lipid extracts from lipid droplets of mouse hepatocytes. Study variable (feeding conditions): HFD = high fat diet; FED = normal diet and fed before sacrifice; FAS = normal diet and fasted before sacrifice. |
| Link: | lipicomics-HFD-LD-study-PL-DG-SM.mzTab |
| Name: | Cytidine |
| Description: | Cytidine reference spectrum example. |
| Link: | Cytidine.mzTab |
| Name: | MTBLS2 study from the MetaboLights reposiory |
| Description: | mzTab generated from the metabolites identified from comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. |
| Link: | MTBLS2.mzTab |