Merge pull request #25 from GeneMAP-Research/dev

edit test
GeneMAP-Research · Sep 16, 2023 · 71bce82 · 71bce82
2 parents c38223f + 6512a0c
commit 71bce82
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diff --git a/illumina/configs/test.config b/illumina/configs/test.config
@@ -12,10 +12,10 @@ params {
 
 
   // computing resource-related parameters
-  account          = "YOUR CLUSTER ACCOUNT/PROJECT NAME"                              
-  partition        = "YOUR CLUSTER QUEUE/PARTITION"                        
+  account          = "humgen"                              
+  partition        = "sadacc-short"                        
   njobs            = 2                                     
-  containers_dir   = "PATH WHERE CONTAINERS ARE STORED"        
+  containers_dir   = ""        
 
 
   // IDAT to GTC: requires less resources

diff --git a/illumina/test.nf b/illumina/test.nf
@@ -20,9 +20,9 @@ workflow {
 
   println "output_prefix   = ${params.output_prefix}"
   println "output_dir      = ${params.output_dir}"
-  println "account         = ${params.account}"
-  println "partition       = ${params.partition}"
-  println "containers_dir  = ${params.containers_dir}"
+  println "containers_dir  = PATH WHERE CONTAINERS ARE STORED"
+  println "account         = ${params.account}        # CHANGE TO YOURS"
+  println "partition       = ${params.partition}      # CHANGE TO YOURS"
   println ""
 
   //call_genotypes()