Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
KatharinaHoff authored Apr 26, 2024
1 parent 00f1c2e commit b8cd99e
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -1294,6 +1294,8 @@ Common problems
BRAKER copies the AUGUSTUS_CONFIG_PATH folder to a writable location. In older versions of Augustus, that file was indeed not existing. If the local writable copy of a folder already exists, BRAKER will not re-copy it. Simply delete the old folder. (It is often `~/.augustus`, so you can simply do `rm -rf ~/.augustus`; the folder might be residing in $PWD if your home directory was not writable).
- *I sit behind a firewall, compleasm cannot download the BUSCO files, what can I do?* See Issue https://github.com/Gaius-Augustus/BRAKER/issues/785#issuecomment-2079787188
Citing BRAKER and software called by BRAKER
=============================================
Expand Down Expand Up @@ -1483,4 +1485,4 @@ Oxford University Press: 2078--9.[↩](#a6)
<b id="f27">[R27]</b> Huang, N., & Li, H. (2023). compleasm: a faster and more accurate reimplementation of BUSCO. Bioinformatics, 39(10), btad595.[↩](#a27)
<b id="f28">[R28]</b> Bruna, T., Gabriel, L. & Hoff, K. J. (2024). Navigating Eukaryotic Genome Annotation Pipelines: A Route Map to BRAKER, Galba, and TSEBRA. arXiv, https://doi.org/10.48550/arXiv.2403.19416 .[↩](#a28)
<b id="f28">[R28]</b> Bruna, T., Gabriel, L. & Hoff, K. J. (2024). Navigating Eukaryotic Genome Annotation Pipelines: A Route Map to BRAKER, Galba, and TSEBRA. arXiv, https://doi.org/10.48550/arXiv.2403.19416 .[↩](#a28)

0 comments on commit b8cd99e

Please sign in to comment.