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Bwameth alignment and MethylDackel methylation extraction pipeline.

Dependencies

  • Nextflow
  • Trim galore!
  • FastQC
  • MultiQC
  • Bwameth
  • Picard
  • MethylDackel

Usage

Adjust the params_file.yml accordingly and run:

nextflow run main.nf -params-file params_file.yml

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