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* refactor eqV2 heads * refactor init_weights * add output_name attribute to eqV2 heads * fix deprecated registry names * remove debug breakpoint * add default name for rank2 head
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from __future__ import annotations | ||
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from .rank2 import Rank2SymmetricTensorHead | ||
from .scalar import EqV2ScalarHead | ||
from .vector import EqV2VectorHead | ||
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__all__ = ["EqV2ScalarHead", "EqV2VectorHead", "Rank2SymmetricTensorHead"] |
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""" | ||
Copyright (c) Meta, Inc. and its affiliates. | ||
This source code is licensed under the MIT license found in the | ||
LICENSE file in the root directory of this source tree. | ||
""" | ||
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from __future__ import annotations | ||
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from functools import partial | ||
from typing import TYPE_CHECKING | ||
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import torch | ||
from torch import nn | ||
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from fairchem.core.common import gp_utils | ||
from fairchem.core.common.registry import registry | ||
from fairchem.core.models.base import GraphData, HeadInterface | ||
from fairchem.core.models.equiformer_v2.transformer_block import FeedForwardNetwork | ||
from fairchem.core.models.equiformer_v2.weight_initialization import eqv2_init_weights | ||
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if TYPE_CHECKING: | ||
from torch_geometric.data import Batch | ||
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@registry.register_model("equiformerV2_scalar_head") | ||
class EqV2ScalarHead(nn.Module, HeadInterface): | ||
def __init__(self, backbone, output_name: str = "energy", reduce: str = "sum"): | ||
super().__init__() | ||
self.output_name = output_name | ||
self.reduce = reduce | ||
self.avg_num_nodes = backbone.avg_num_nodes | ||
self.energy_block = FeedForwardNetwork( | ||
backbone.sphere_channels, | ||
backbone.ffn_hidden_channels, | ||
1, | ||
backbone.lmax_list, | ||
backbone.mmax_list, | ||
backbone.SO3_grid, | ||
backbone.ffn_activation, | ||
backbone.use_gate_act, | ||
backbone.use_grid_mlp, | ||
backbone.use_sep_s2_act, | ||
) | ||
self.apply(partial(eqv2_init_weights, weight_init=backbone.weight_init)) | ||
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def forward(self, data: Batch, emb: dict[str, torch.Tensor | GraphData]): | ||
node_output = self.energy_block(emb["node_embedding"]) | ||
node_output = node_output.embedding.narrow(1, 0, 1) | ||
if gp_utils.initialized(): | ||
node_output = gp_utils.gather_from_model_parallel_region(node_output, dim=0) | ||
output = torch.zeros( | ||
len(data.natoms), | ||
device=node_output.device, | ||
dtype=node_output.dtype, | ||
) | ||
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output.index_add_(0, data.batch, node_output.view(-1)) | ||
if self.reduce == "sum": | ||
return {self.output_name: output / self.avg_num_nodes} | ||
elif self.reduce == "mean": | ||
return {self.output_name: output / data.natoms} | ||
else: | ||
raise ValueError( | ||
f"reduce can only be sum or mean, user provided: {self.reduce}" | ||
) |
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""" | ||
Copyright (c) Meta, Inc. and its affiliates. | ||
This source code is licensed under the MIT license found in the | ||
LICENSE file in the root directory of this source tree. | ||
""" | ||
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from __future__ import annotations | ||
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from functools import partial | ||
from typing import TYPE_CHECKING | ||
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import torch | ||
from torch import nn | ||
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from fairchem.core.common import gp_utils | ||
from fairchem.core.common.registry import registry | ||
from fairchem.core.models.base import HeadInterface | ||
from fairchem.core.models.equiformer_v2.transformer_block import ( | ||
SO2EquivariantGraphAttention, | ||
) | ||
from fairchem.core.models.equiformer_v2.weight_initialization import eqv2_init_weights | ||
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if TYPE_CHECKING: | ||
from torch_geometric.data import Batch | ||
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from fairchem.core.models.base import BackboneInterface | ||
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@registry.register_model("equiformerV2_vector_head") | ||
class EqV2VectorHead(nn.Module, HeadInterface): | ||
def __init__(self, backbone: BackboneInterface, output_name: str = "forces"): | ||
super().__init__() | ||
self.output_name = output_name | ||
self.activation_checkpoint = backbone.activation_checkpoint | ||
self.force_block = SO2EquivariantGraphAttention( | ||
backbone.sphere_channels, | ||
backbone.attn_hidden_channels, | ||
backbone.num_heads, | ||
backbone.attn_alpha_channels, | ||
backbone.attn_value_channels, | ||
1, | ||
backbone.lmax_list, | ||
backbone.mmax_list, | ||
backbone.SO3_rotation, | ||
backbone.mappingReduced, | ||
backbone.SO3_grid, | ||
backbone.max_num_elements, | ||
backbone.edge_channels_list, | ||
backbone.block_use_atom_edge_embedding, | ||
backbone.use_m_share_rad, | ||
backbone.attn_activation, | ||
backbone.use_s2_act_attn, | ||
backbone.use_attn_renorm, | ||
backbone.use_gate_act, | ||
backbone.use_sep_s2_act, | ||
alpha_drop=0.0, | ||
) | ||
self.apply(partial(eqv2_init_weights, weight_init=backbone.weight_init)) | ||
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def forward(self, data: Batch, emb: dict[str, torch.Tensor]): | ||
if self.activation_checkpoint: | ||
output = torch.utils.checkpoint.checkpoint( | ||
self.force_block, | ||
emb["node_embedding"], | ||
emb["graph"].atomic_numbers_full, | ||
emb["graph"].edge_distance, | ||
emb["graph"].edge_index, | ||
emb["graph"].node_offset, | ||
use_reentrant=not self.training, | ||
) | ||
else: | ||
output = self.force_block( | ||
emb["node_embedding"], | ||
emb["graph"].atomic_numbers_full, | ||
emb["graph"].edge_distance, | ||
emb["graph"].edge_index, | ||
node_offset=emb["graph"].node_offset, | ||
) | ||
output = output.embedding.narrow(1, 1, 3) | ||
output = output.view(-1, 3).contiguous() | ||
if gp_utils.initialized(): | ||
output = gp_utils.gather_from_model_parallel_region(output, dim=0) | ||
return {self.output_name: output} |
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