Accidentally forgot the parent structure of the variable. #543
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| workflow_dispatch: | |
| push: | |
| paths-ignore: | |
| - '**.nix' | |
| - 'flake.lock' | |
| pull_request: | |
| paths-ignore: | |
| - '**.nix' | |
| - 'flake.lock' | |
| concurrency: ci-ubuntu-${{ github.ref }} | |
| jobs: | |
| ubuntu: | |
| # For available GitHub-hosted runners, see: | |
| # https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners | |
| runs-on: ubuntu-24.04 | |
| name: ubuntu (${{ matrix.compiler }} ${{ matrix.mpi }} MPI ${{ matrix.openmp }} OpenMP) | |
| strategy: | |
| # Allow other runners in the matrix to continue if some fail | |
| fail-fast: false | |
| matrix: | |
| compiler: [gcc] | |
| mpi: [with] | |
| openmp: [with] | |
| include: | |
| - compiler: gcc | |
| compiler-pkgs: "g++ gcc" | |
| cc: "gcc" | |
| cxx: "g++" | |
| openmp: with | |
| openmp-cmake-flags: "-DWITH_OpenMP=ON" | |
| - compiler: gcc | |
| compiler-pkgs: "g++ gcc" | |
| cc: "gcc" | |
| cxx: "g++" | |
| mpi: without | |
| openmp: with | |
| openmp-cmake-flags: "-DWITH_OpenMP=ON" | |
| - compiler: gcc | |
| compiler-pkgs: "g++ gcc" | |
| cc: "gcc" | |
| cxx: "g++" | |
| mpi: with | |
| openmp: without | |
| openmp-cmake-flags: "-DWITH_OpenMP=OFF" | |
| - compiler: clang | |
| compiler-pkgs: "clang" | |
| cc: "clang" | |
| cxx: "clang++" | |
| mpi: with | |
| openmp: without | |
| openmp-cmake-flags: "-DWITH_OpenMP=OFF" | |
| # - compiler: clang | |
| # compiler-pkgs: "clang libomp-dev" | |
| # cc: "clang" | |
| # cxx: "clang++" | |
| # mpi: with | |
| # openmp: with | |
| # openmp-cmake-flags: "-DWITH_OpenMP=ON -DOpenMP_C_FLAGS='-fopenmp=libgomp -D_OPENMP=201511' -DOpenMP_CXX_FLAGS='-fopenmp=libgomp -D_OPENMP=201511' -DOpenMP_C_LIB_NAMES='gomp;pthread' -DOpenMP_CXX_LIB_NAMES='gomp;pthread'" | |
| env: | |
| CC: ${{ matrix.cc }} | |
| CXX: ${{ matrix.cxx }} | |
| steps: | |
| - name: get CPU information | |
| run: lscpu | |
| - name: checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: install dependencies | |
| run: | | |
| sudo apt -qq update | |
| sudo apt install -y ${{ matrix.compiler-pkgs }} cmake gfortran \ | |
| libopenblas-dev \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "libhypre-dev") \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "libopenmpi-dev libmumps-dev libparmetis-dev") \ | |
| $([ "${{ matrix.compiler }}" == "gcc" ] && echo "libsuitesparse-dev") \ | |
| $([ "${{ matrix.compiler }}" == "gcc" ] && [ "${{ matrix.mpi }}" == "with" ] && echo "librocalution-dev") \ | |
| libqwt-qt5-dev qtscript5-dev libqt5svg5-dev \ | |
| libvtk9-qt-dev libglvnd-dev \ | |
| occt-misc libocct-data-exchange-dev libocct-draw-dev \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "trilinos-all-dev libptscotch-dev") \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "libnetcdff-dev") | |
| - name: configure | |
| # CHOLMOD and rocALUTION require a working OpenMP package. So, disable them for clang. | |
| run: | | |
| # work around error in the rocALUTION CMake config file distributed by Ubuntu | |
| if [ "${{ matrix.compiler }}" == "gcc" ] && [ "${{ matrix.mpi }}" == "with" ]; then | |
| sudo sed -i '/find_dependency(HIP)/d' /usr/lib/x86_64-linux-gnu/cmake/rocalution/rocalution-config.cmake | |
| fi | |
| mkdir ${GITHUB_WORKSPACE}/build | |
| cd ${GITHUB_WORKSPACE}/build | |
| cmake \ | |
| -DCMAKE_BUILD_TYPE="Release" \ | |
| -DCMAKE_INSTALL_PREFIX="${GITHUB_WORKSPACE}/usr" \ | |
| -DBLA_VENDOR="OpenBLAS" \ | |
| ${{ matrix.openmp-cmake-flags }} \ | |
| -DWITH_LUA=ON \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "-DWITH_Zoltan=ON" || echo "-DWITH_Zoltan=OFF") \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "-DWITH_Mumps=ON" || echo "-DWITH_Mumps=OFF") \ | |
| $([ "${{ matrix.compiler }}" == "gcc" ] && echo "-DWITH_CHOLMOD=ON" || echo "-DWITH_CHOLMOD=OFF") \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "-DWITH_Hypre=ON -DHYPRE_INCLUDE_DIR=/usr/include/hypre" || echo "-DWITH_Hypre=OFF") \ | |
| $([ "${{ matrix.compiler }}" == "gcc" ] && [ "${{ matrix.mpi }}" == "with" ] && echo "-DWITH_ROCALUTION=ON" || echo "-DWITH_ROCALUTION=OFF") \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "-DWITH_ElmerIce=ON" || echo "-DWITH_ElmerIce=OFF") \ | |
| -DWITH_ELMERGUI=ON \ | |
| -DWITH_VTK=ON \ | |
| -DWITH_OCC=ON \ | |
| -DWITH_MATC=ON \ | |
| -DWITH_PARAVIEW=ON \ | |
| -DCREATE_PKGCONFIG_FILE=ON \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "-DWITH_MPI=ON -DMPI_TEST_MAXPROC=2 -DMPIEXEC_PREFLAGS=--allow-run-as-root" || echo "-DWITH_MPI=OFF") \ | |
| $([ "${{ matrix.mpi }}" == "with" ] && echo "-DWITH_Trilinos=ON" || echo "-DWITH_Trilinos=OFF") \ | |
| .. | |
| - name: build | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| cmake --build . -j$(nproc) | |
| - name: install | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| cmake --install . | |
| - name: check | |
| id: run-ctest | |
| timeout-minutes: 150 | |
| env: | |
| CTEST_OUTPUT_ON_FAILURE: 1 | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| ctest . \ | |
| -LE slow \ | |
| -j$(nproc) \ | |
| --timeout 300 | |
| - name: Re-run tests | |
| if: always() && (steps.run-ctest.outcome == 'failure') | |
| timeout-minutes: 60 | |
| env: | |
| CTEST_OUTPUT_ON_FAILURE: 1 | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/build | |
| # get names of failed tests and strip potential "_np*" suffix | |
| failed_tests=($(ctest . -N --rerun-failed | grep -E "Test\s+#.*" | awk '{print $3}' | sed -e 's/_np[0-9]*$//g')) | |
| # remove duplicate test names | |
| unique_failed_tests=($(echo "${failed_tests[@]}" | tr ' ' '\n' | sort -u | tr '\n' ' ')) | |
| for test in "${unique_failed_tests[@]}"; do | |
| # check if test is from fem or ElmerIce | |
| if [ -d fem/tests/${test} ]; then | |
| test_root=fem/tests | |
| else | |
| test_root=elmerice/Tests | |
| fi | |
| echo "::group::Content of ${test_root}/${test}" | |
| echo ---- Files ---- | |
| ls -Rl ${test_root}/${test} | |
| if [ -f ${test_root}/${test}/test-stderr*.log ]; then | |
| echo ---- Content of test-stderr*.log ---- | |
| cat ${test_root}/${test}/test-stderr*.log | |
| fi | |
| if [ -f ${test_root}/${test}/test-stdout*.log ]; then | |
| echo ---- Content of test-stdout*.log ---- | |
| cat ${test_root}/${test}/test-stdout*.log | |
| fi | |
| echo "::endgroup::" | |
| done | |
| echo "::group::Re-run failing tests" | |
| ctest --rerun-failed --output-on-failure --timeout 180 || true | |
| echo "::endgroup::" | |
| echo "::group::Log from these tests" | |
| [ ! -f Testing/Temporary/LastTest.log ] || cat Testing/Temporary/LastTest.log | |
| echo "::endgroup::" |