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Ready for release #1986

Merged
merged 277 commits into from
Oct 17, 2024
Merged

Ready for release #1986

merged 277 commits into from
Oct 17, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Jun 13, 2024

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Commits on Jun 14, 2024

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  3. Now using reciprocal filter

    jajhall committed Jun 14, 2024
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Commits on Jun 18, 2024

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Commits on Jun 19, 2024

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Commits on Jun 30, 2024

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Commits on Jul 1, 2024

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  3. Minor change

    fwesselm committed Jul 1, 2024
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  5. Merge pull request #1829 from fwesselm/fixNeos4

    Assertion failure on neos4
    jajhall authored Jul 1, 2024
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Commits on Jul 9, 2024

  1. Merge pull request #1832 from fwesselm/roundWithTolsPostsolve

    Use tolerances when rounding
    jajhall authored Jul 9, 2024
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  2. Added int64_t mip_total_lp_iterations to HighsCallbackDataOut and mod…

    …ified accessor function
    jajhall committed Jul 9, 2024
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  4. Merge pull request #1839 from ERGO-Code/fix-1814

    Added int64_t mip_total_lp_iterations to HighsCallbackDataOut and modified accessor function
    jajhall authored Jul 9, 2024
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  5. Introduced highsFprintfString to replace fprintf(file so that solutio…

    …n etc to console can be handled through callbacks
    jajhall committed Jul 9, 2024
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Commits on Jul 10, 2024

  1. Replaced fprintf(file in HighsModelUtils.cpp by stringstreams and cal…

    …ls to highsFprintfString(file, log_options
    jajhall committed Jul 10, 2024
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  2. Merge pull request #1840 from ERGO-Code/fix-1811

    Fix 1811
    jajhall authored Jul 10, 2024
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  3. Identified that HighsMipSolverData::checkLimits is not called for a l…

    …ong time before new call before mipdata_->evaluateRootNode();
    jajhall committed Jul 10, 2024
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  5. Merge pull request #1841 from ERGO-Code/fix-1813

    Fix 1813
    jajhall authored Jul 10, 2024
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Commits on Jul 11, 2024

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Commits on Jul 14, 2024

  1. Now clearing solution when completeSolutionFromDiscreteAssignment dec…

    …ides it's not worth it
    jajhall committed Jul 14, 2024
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  6. Merge pull request #1843 from ERGO-Code/fix-1808

    Add facility to specify a partial primal solution via indices and values
    jajhall authored Jul 14, 2024
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Commits on Jul 15, 2024

  1. Added option mip_max_start_nodes to be used for mip_max_nodes when a …

    …MIP is solved to complete a partial solution to avoid excessive cost
    jajhall committed Jul 15, 2024
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  2. Merge pull request #1844 from ERGO-Code/fix-1808

    Added mip_max_start_nodes` to avoid excessive cost when a MIP is solved to complete a partial solution.
    jajhall authored Jul 15, 2024
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Commits on Jul 16, 2024

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Commits on Jul 17, 2024

  1. Take scale into account

    fwesselm committed Jul 17, 2024
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  3. Add comment

    fwesselm committed Jul 17, 2024
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Commits on Jul 22, 2024

  1. Update CONTRIBUTING.md

    Fix broken link to documentation subdirectory.
    Mathemalsky authored Jul 22, 2024
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  3. Merge pull request #1851 from Mathemalsky/master

    Fix a broken link.
    jajhall authored Jul 22, 2024
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  4. Merge pull request #1852 from ERGO-Code/update-docs

    Added IPM reference and commented on absence of references for QP and MIP
    jajhall authored Jul 22, 2024
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Commits on Jul 23, 2024

  1. Update index.md

    Fix typo
    Mathemalsky authored Jul 23, 2024
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  2. Merge pull request #1854 from Mathemalsky/patch-1

    Update index.md
    jajhall authored Jul 23, 2024
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  3. Refactor highspy for enhanced usability

    Refactor highspy for enhanced usability
    
    This commit significantly improves the `Highs` class within `highs.py`, focusing on enhancing usability, efficiency, and robustness. Key changes include:
    
    - Added comprehensive docstrings.
    - Improved methods for adding, deleting, and retrieving multiple variables and constraints, for a more flexible and efficient API.
    - Standardized some API conventions.  Note, this is a breaking change for the constraint value/dual methods.
    - Updated tests and examples.
    mathgeekcoder committed Jul 23, 2024
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  4. Update minimal.py

    Updated minimal.py (removed test code)
    mathgeekcoder committed Jul 23, 2024
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  5. Merge pull request #1855 from mathgeekcoder/highspy-updates

    Refactor highspy for enhanced usability and performance
    jajhall authored Jul 23, 2024
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Commits on Jul 26, 2024

  1. Added options write_presolved_model_to_file and write_presolved_model…

    …_file, and writes out OK unless file name is empty
    jajhall committed Jul 26, 2024
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Commits on Jul 30, 2024

  1. Highs::reportModel now uses const HighsModel& model argument so it ca…

    …n report the presolved LP
    jajhall committed Jul 30, 2024
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Commits on Jul 31, 2024

  1. Merge pull request #1863 from ERGO-Code/fix-1729

    Fix 1729
    jajhall authored Jul 31, 2024
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Commits on Aug 4, 2024

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  2. Merge pull request #1848 from fwesselm/presolveBugTransform

    Update substitutions if a column is transformed
    jajhall authored Aug 4, 2024
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Commits on Aug 5, 2024

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Commits on Aug 6, 2024

  1. Add type stub file

    N-Wouda committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. Merge pull request #1867 from N-Wouda/add-type-stub-file

    Add Python type stub file
    jajhall authored Aug 7, 2024
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Commits on Aug 12, 2024

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Commits on Aug 14, 2024

  1. Highs::computeInfeasibleRows renamed Highs::elasticityFilter and pass…

    …ing general penalties
    jajhall committed Aug 14, 2024
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Commits on Aug 15, 2024

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  4. Merge pull request #1876 from ERGO-Code/fix-1872

    Fix 1872
    jajhall authored Aug 15, 2024
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Commits on Aug 16, 2024

  1. Restored full C API unit test and corrected references to format of H…

    …essian in highs_c_api.h
    jajhall committed Aug 16, 2024
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  3. Merge pull request #1879 from ERGO-Code/fix-1872

    Restored full C API unit test and corrected/updated documentaiton of Hessian
    jajhall authored Aug 16, 2024
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Commits on Aug 17, 2024

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Commits on Aug 18, 2024

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Commits on Aug 19, 2024

  1. HPresolve::fixColToLower/Upper now reanmed fixColToLower/UpperOrUnbou…

    …nded and returns true if fixing to infinite value
    jajhall committed Aug 19, 2024
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  5. Merge pull request #1884 from few/highspy-feasibilityRelaxation

    highspy: Expose new feasibility relaxation feature
    jajhall authored Aug 19, 2024
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  8. Merge pull request #1885 from ERGO-Code/fix-1883

    Fix 1883
    jajhall authored Aug 19, 2024
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Commits on Aug 20, 2024

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Commits on Aug 21, 2024

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  2. Merge pull request #1889 from fwesselm/fixWarningReorder

    Fix compiler warning
    jajhall authored Aug 21, 2024
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Commits on Aug 22, 2024

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Commits on Aug 25, 2024

  1. Introduced examples/plot_highs_log.py and final logging line in MIP s…

    …olver to allow complete plotting
    jajhall committed Aug 25, 2024
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  2. Now plotting gap

    jajhall committed Aug 25, 2024
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  5. Merge pull request #1894 from ERGO-Code/MIP-log-plotter

    Mip log plotter
    jajhall authored Aug 25, 2024
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Commits on Aug 26, 2024

  1. Merge pull request #1890 from ERGO-Code/fix-1872a

    `col_ecol_offset` now set - as const - for greater clarity
    jajhall authored Aug 26, 2024
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Commits on Aug 27, 2024

  1. Fix uninitialized arrays

    fwesselm committed Aug 27, 2024
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Commits on Aug 28, 2024

  1. Merge pull request #1897 from fwesselm/uninitArrays

    Initialize some arrays
    jajhall authored Aug 28, 2024
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  3. Merge pull request #1898 from ERGO-Code/MIP-log-plotter

    plot_highs_log.py now avoids printing spurious incumbent lines when best solution is NaN
    jajhall authored Aug 28, 2024
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  5. Chaser

    fwesselm committed Aug 28, 2024
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  6. Added public enum HessianFormat, public class HighsHessian, private s…

    …tatic extern int Highs_passHessian, private static extern int Highs_passModel and private static extern int Highs_getHessianNumNz to highs_csharp_api.cs
    jajhall committed Aug 28, 2024
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Commits on Aug 29, 2024

  1. Use std::next a little bit

    fwesselm committed Aug 29, 2024
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Commits on Aug 30, 2024

  1. Make hashes an std::array

    fwesselm committed Aug 30, 2024
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Commits on Sep 2, 2024

  1. Make entries an std::array

    fwesselm committed Sep 2, 2024
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  2. Merge branch 'HighsHashTreeChanges2' of https://github.com/fwesselm/H…

    …iGHS into useStdArray
    
    # Conflicts:
    #	src/util/HighsHashTree.h
    fwesselm committed Sep 2, 2024
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  3. Fix warning along the way

    fwesselm committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. Two minor changes

    fwesselm committed Sep 3, 2024
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  3. Fix typo

    fwesselm committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. Merge pull request #1908 from fwesselm/useStdArray

    Some minor changes
    jajhall authored Sep 4, 2024
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  2. Formatted

    jajhall committed Sep 4, 2024
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Commits on Sep 6, 2024

  1. Precompute expensive computations

    Replace hot FDIVs with FMULs through saving off the inverse values
    outside the loops, so we don't incur the cost on each loop iteration.
    heshpdx committed Sep 6, 2024
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  2. Merge pull request #1911 from heshpdx/master

    Precompute expensive computations
    jajhall authored Sep 6, 2024
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  4. Merge pull request #1912 from ERGO-Code/revert-1911-master

    Revert "Precompute expensive computations"
    jajhall authored Sep 6, 2024
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  5. Replace expensive computations

    Replace hot FDIVs with FMULs through precomputing inverse values
    outside the loops. FDIVs are always more expensive than FMULs,
    although the amount varies per CPU microarchitecture.
    heshpdx committed Sep 6, 2024
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Commits on Sep 7, 2024

  1. Merge pull request #1914 from heshpdx/div_fixes

    Replace expensive computations
    jajhall authored Sep 7, 2024
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  2. Merge pull request #1886 from michaelbynum/release_gil

    Release GIL and Run in Background Thread
    jajhall authored Sep 7, 2024
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Commits on Sep 8, 2024

  1. Now reading rvb-sub, but need to add the comment trim to other MPS re…

    …ad methods to pass unit test
    jajhall committed Sep 8, 2024
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Commits on Sep 9, 2024

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  2. Merge pull request #1909 from ERGO-Code/fix-1908

    Fix 1908
    jajhall authored Sep 9, 2024
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Commits on Sep 10, 2024

  1. Fix some typos

    fwesselm committed Sep 10, 2024
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  3. Added src/solvers.md

    jajhall committed Sep 10, 2024
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  4. Fixed internal links

    jajhall committed Sep 10, 2024
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  5. Merge pull request #1916 from ERGO-Code/fix-1915

    Fix 1915
    jajhall authored Sep 10, 2024
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  6. Added PDLP!

    jajhall committed Sep 10, 2024
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  7. Merge pull request #1917 from ERGO-Code/fix-1915

    Added PDLP to docs!
    jajhall authored Sep 10, 2024
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Commits on Sep 11, 2024

  1. Tiny simplification

    fwesselm committed Sep 11, 2024
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  2. Merge pull request #1918 from fwesselm/minorStuffAgain

    Add function to compute fractional part
    jajhall authored Sep 11, 2024
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  3. Methods receiving matrix data where only small values are explicit ze…

    …ros (so removed internally) are now silent and return HighsStatus::kOk (since internal matrix is exact)
    jajhall committed Sep 11, 2024
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  5. Added comment.mps

    jajhall committed Sep 11, 2024
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Commits on Sep 12, 2024

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  6. c cc cpp h hpp

    galabovaa committed Sep 12, 2024
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  7. workflow update

    galabovaa committed Sep 12, 2024
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  8. exclude

    galabovaa committed Sep 12, 2024
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  9. extern

    galabovaa committed Sep 12, 2024
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  10. exclude

    galabovaa committed Sep 12, 2024
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  11. exclude

    galabovaa committed Sep 12, 2024
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  12. versions only

    galabovaa committed Sep 12, 2024
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  13. empty inits diff with 18.3

    galabovaa committed Sep 12, 2024
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  14. Merge pull request #1920 from ERGO-Code/fix-1860

    Fix 1860
    jajhall authored Sep 12, 2024
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  15. Merge pull request #1922 from ERGO-Code/clang-format-update

    Clang format update
    jajhall authored Sep 12, 2024
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  17. Merge pull request #1919 from ERGO-Code/fix-1899

    Methods receiving matrix data where only small values are explicit ze…
    jajhall authored Sep 12, 2024
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Commits on Sep 13, 2024

  1. An attempt to fix potential deadlock issues in Windows.

    Removes synchronization with worker threads on shutdown. Also removes the "search" for the main executor in the worker threads.
    
    Instead we simply pass the main executor to the thread as a parameter.  We also pass the underlying shared_ptr to avoid potential edge cases where reference count drops to zero before some threads initialize.
    
    I made the run_worker static to avoid any confusion about "this" vs "executor->ptr", and so it uses the shared_ptr to reference the shared memory.
    
    The last worker thread will delete the shared memory, via the shared_ptr reference count.
    mathgeekcoder committed Sep 13, 2024
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  2. Changed HighsTaskExecutor to explicitly handle reference counting to …

    …ensure shared memory is kept alive until all threads have finished.
    
    Changed identification of main thread to use std::thread::id rather than thread_local memory pointer.
    
    Added vector of workerThreads which can be detached or joined on shutdown.
    
    Ensured that shutdown can only block if called on main thread, otherwise it might be possible to deadlock.
    
    Manually using cache_aligned memory allocation, it was used previously with shared_ptr and I wanted to keep it just in case.
    
    Note: I had some weird issues when compiling with /MD flag with mvsc.  It would run but often crash.  /MT flag works consistently for me.
    mathgeekcoder committed Sep 13, 2024
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Commits on Sep 14, 2024

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  3. Updated FEATURES.md

    jajhall committed Sep 14, 2024
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Commits on Sep 16, 2024

  1. debug_memory

    galabovaa committed Sep 16, 2024
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  2. Created new branch with new PR to avoid ugly rebase issue.

    Major highspy update:
    * changed `highs_linear_expression` to be immutable by default
    * improved callback support
    * improved test coverage (99%)
    * performance and usability enhancements
    * Support `__iadd__`, `__imul__`, etc.
    * Updated chain comparison support in immutable setting
    * `h.val()` can take `highs_linear_expression`
    * `expr == [lb,ub]` -> `lb <= expr <= ub` syntax
    * `qsum`
    * added pretty print `__repr__` and `__str__`
    * added KeyboardInterrupt support
    * added user interrupt
    * fixed slicing issues with numpy and highs
    * added `resetGlobalScheduler`
    * released GIL for `Presolve`
    * fixed issues with deadlock on Windows
    * fixed MIP solution callback issue
    * support `getExpr` that creates a `highs_linear_expression` from existing row
    
    Should address multiple issues: #1865, #1882, #1888, #1892, #1903, #1904, and perhaps #1905
    mathgeekcoder committed Sep 16, 2024
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Commits on Sep 17, 2024

  1. thread OK leak maybe not

    galabovaa committed Sep 17, 2024
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  2. add sanitizers to cmake

    galabovaa committed Sep 17, 2024
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  3. ubuntu sanitizers workflow

    galabovaa committed Sep 17, 2024
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  5. bool isMainThread

    galabovaa committed Sep 17, 2024
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  6. set main elsewhere

    galabovaa committed Sep 17, 2024
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Commits on Sep 18, 2024

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  2. fix cmake regex

    "
    galabovaa committed Sep 18, 2024
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  3. wip system error

    galabovaa committed Sep 18, 2024
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  4. not segfaulting

    galabovaa committed Sep 18, 2024
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  6. shutdown

    galabovaa committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. comment

    galabovaa committed Sep 19, 2024
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  4. comment'

    galabovaa committed Sep 19, 2024
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  5. clean up 1.

    "
    galabovaa committed Sep 19, 2024
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  6. formatting

    galabovaa committed Sep 19, 2024
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Commits on Sep 20, 2024

  1. Merge pull request #1927 from ERGO-Code/consider-1911

    Consider 1911
    jajhall authored Sep 20, 2024
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  2. move git has further up

    galabovaa committed Sep 20, 2024
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  3. clean up

    galabovaa committed Sep 20, 2024
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  4. Added double computeBasisCondition() { return computeBasisCondition(t…

    …his->lp_); } and now using passed HighsLp; Formatted
    jajhall committed Sep 20, 2024
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  7. Add utility

    fwesselm committed Sep 20, 2024
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  8. Merge pull request #1939 from pierre-haessig/patch-1

    fix Markdown list syntax in solvers.md
    jajhall authored Sep 20, 2024
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  9. Only check for timeout if time_limit is finite, and don't consider ti…

    …med logging if output_flag is false; formatted
    jajhall committed Sep 20, 2024
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Commits on Sep 21, 2024

  1. Several significant updates:

    * Fixed all static analysis (strict) from pyright
    * Updated typing across all highspy, including submodules
    * Added numpy subclass HighspyArray. This allows for better typing, fast summation and vectorized linear expressions
    * General cleanup, including fixes from ruff linting and formatting
    * Added overload functions for improved intellisense
    * Additional checks, tests, and code coverage
    * Slight updates to cpp bindings to ensure types are available
    mathgeekcoder committed Sep 21, 2024
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Commits on Sep 22, 2024

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Commits on Sep 23, 2024

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  2. Merge pull request #1943 from ERGO-Code/rename-cxx-test

    rename cmake cxx test function
    galabovaa authored Sep 23, 2024
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  4. Change isinstance(x, Union[type, type]) to `isinstance(x, (type, ty…

    …pe))` for backwards compatibility.
    mathgeekcoder committed Sep 23, 2024
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  5. updates

    galabovaa committed Sep 23, 2024
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Commits on Sep 24, 2024

  1. ready to merge

    galabovaa committed Sep 24, 2024
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Commits on Sep 25, 2024

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  3. Merge pull request #1949 from ERGO-Code/fix-1945

    No longer removing trailing comments in MPS files
    jajhall authored Sep 25, 2024
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  5. Now possibly computing exact kappa, and possibly reporting on compari…

    …son with approximate kappa
    jajhall committed Sep 25, 2024
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  6. Cleaned up and formatted-ish

    jajhall committed Sep 25, 2024
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Commits on Sep 26, 2024

  1. Merge pull request #1948 from ERGO-Code/hanging-issue

    Bug fix and some tests
    galabovaa authored Sep 26, 2024
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  2. Merge pull request #1942 from mathgeekcoder/highspy_major_updates

    Significant enhancements and stability for highspy
    galabovaa authored Sep 26, 2024
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  3. Merge pull request #1881 from few/fix-1880

    writePrimalSolution: flush file after each call (#1880)
    galabovaa authored Sep 26, 2024
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  4. :wq

    Merge branch 'latest' into pass-model-name
    galabovaa committed Sep 26, 2024
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  5. fix test

    galabovaa committed Sep 26, 2024
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  6. test name

    galabovaa committed Sep 26, 2024
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Commits on Sep 27, 2024

  1. Some more fun with warnings

    fwesselm committed Sep 27, 2024
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  2. Merge pull request #1953 from mathgeekcoder/highspy_py38_typing_issue

    Fix highspy python 3.8 typing compatibility issue
    galabovaa authored Sep 27, 2024
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Commits on Oct 2, 2024

  1. Merge pull request #1951 from ERGO-Code/pass-model-name

    Pass model name
    galabovaa authored Oct 2, 2024
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  2. memory leaks

    galabovaa committed Oct 2, 2024
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  3. Merge pull request #1957 from ERGO-Code/cupdlp-memory-leaks

    cupdlp memory leaks
    galabovaa authored Oct 2, 2024
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Commits on Oct 3, 2024

  1. Merge branch 'latest' of https://github.com/ERGO-Code/HiGHS into mino…

    …rStuffAgainAndAgain
    fwesselm committed Oct 3, 2024
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Commits on Oct 7, 2024

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Commits on Oct 8, 2024

  1. Merge pull request #1963 from fwesselm/presolveUtilImpliedInt

    Presolve: Add utility to convert variable into an implied integer
    jajhall authored Oct 8, 2024
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  2. Clang format 18 frig

    jajhall committed Oct 8, 2024
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  3. Clang format 18 frig

    jajhall committed Oct 8, 2024
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Commits on Oct 9, 2024

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  2. Remove an unused variable

    fwesselm committed Oct 9, 2024
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  3. Merge pull request #1938 from ERGO-Code/fix-1869

    Condition number can be computed using Highs::getKappa()
    jajhall authored Oct 9, 2024
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  4. Merge pull request #1941 from ERGO-Code/fix-1930

    Only check for timeout if time_limit is finite, and don't consider timed logging if output_flag is false; formatted
    jajhall authored Oct 9, 2024
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  5. Merge pull request #1961 from fwesselm/minorStuffAgainAndAgain

    Fix some more compiler warnings
    galabovaa authored Oct 9, 2024
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Commits on Oct 10, 2024

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Commits on Oct 11, 2024

  1. Merge pull request #1968 from fwesselm/forcingRowLambda

    Row presolve: Add lambda to check forcing rows
    jajhall authored Oct 11, 2024
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Commits on Oct 12, 2024

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  2. Better testing; formatted

    jajhall committed Oct 12, 2024
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Commits on Oct 14, 2024

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  3. Merge pull request #1974 from fwesselm/strengthenCoefLambda

    Another minor change to row presolve
    jajhall authored Oct 14, 2024
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  4. Formatted

    jajhall committed Oct 14, 2024
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Commits on Oct 15, 2024

  1. Now checking residual errors after IPM and PDLP, and correcting row v…

    …alues and column duals accordingly
    jajhall committed Oct 15, 2024
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  2. WIP

    jajhall committed Oct 15, 2024
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  3. Formatted

    jajhall committed Oct 15, 2024
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  4. Correct formatting?

    jajhall committed Oct 15, 2024
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  5. Merge pull request #1978 from ERGO-Code/fix-1966a

    Fix 1966a
    jajhall authored Oct 15, 2024
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Commits on Oct 16, 2024

  1. Frigged formatting

    jajhall committed Oct 16, 2024
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  2. Frig format again

    jajhall committed Oct 16, 2024
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  3. Merge pull request #1972 from ERGO-Code/enhance-check-solution

    Enhance check solution
    jajhall authored Oct 16, 2024
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  4. always correct residuals

    galabovaa committed Oct 16, 2024
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  5. formatting

    galabovaa committed Oct 16, 2024
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  6. clean up extra tests here

    galabovaa committed Oct 16, 2024
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  8. Merge pull request #1982 from ERGO-Code/correct-residuals

    Correct residuals
    galabovaa authored Oct 16, 2024
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Commits on Oct 17, 2024

  1. Added more to Features.md

    jajhall committed Oct 17, 2024
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  3. version bump

    galabovaa committed Oct 17, 2024
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  4. Merge pull request #1985 from ERGO-Code/release-1.8

    version bump
    galabovaa authored Oct 17, 2024
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