Cell Viewer - a Web APP for Single Cell Data Analysis and Visualization¹

Introduction

scRNA-seq data analysis web portals serve as vital tools in biological research.

Figure 1. Procedure of Single Cell Experiments in Labs

Figure 2. Functions of Cell Viewer

Cell Viewer will help researchers visualize and analysis data in an easy way.

-- Web apps make scRNA-seq data analysis more accessible to researchers without extensive computational expertise.

-- Provide standardized and reproducible analysis, which is crucial for ensuring consistent results across different studies.

-- More advanced visualization that help in the interpretation of complex datasets, allowing users to visualize data in various formats that highlight different aspects of the data, such as gene expression patterns, clustering of cell types.

-- Offer interactive analysis capabilities, allowing users to tweak parameters and instantly see how changes affect results

Implementation

Figure 3. Framework of Cell Viewer

Functionalities

-- Visualize original data

-- Support customized data analysis on the backend

-- Visualize analyzed data

-- Reorganize data and download

Demo

Codes

All codes are in this private repositary. Please reach me [email protected] for codes and more.

Footnotes

1. This web app is derived and extended from a project I designed and implemented in course System Design of Cloud Computing CS6211, Gatech OMSCS program. ↩