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{2023.06}[2023b] GROMACS 2024.4 w/ CUDA 12.4.0 #828

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merged 5 commits into from
Dec 2, 2024

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@bedroge bedroge commented Nov 26, 2024

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@bedroge bedroge added 2023.06-software.eessi.io 2023.06 version of software.eessi.io accel:nvidia labels Nov 26, 2024
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Instance eessi-bot-riscv is configured to build for:

  • architectures: riscv64/generic
  • repositories: riscv.eessi.io-20240402

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eessi-bot bot commented Nov 26, 2024

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

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Instance eessi-bot-riscv is configured to build for:

  • architectures: riscv64/generic
  • repositories: riscv.eessi.io-20240402

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eessi-bot bot commented Nov 26, 2024

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

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bedroge commented Nov 26, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80

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eessi-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

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riscv-eessi-io-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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riscv-eessi-io-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 26, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen2 and accelerator nvidia/cc80 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_828/31074

date job status comment
Nov 26 12:16:19 UTC 2024 submitted job id 31074 awaits release by job manager
Nov 26 12:16:33 UTC 2024 released job awaits launch by Slurm scheduler
Nov 26 12:22:42 UTC 2024 running job 31074 is running
Nov 26 12:44:25 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-31074.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1732624182.tar.gzsize: 0 MiB (45 bytes)
entries: 0
modules under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/modules/all
no module files in tarball
software under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/software
no software packages in tarball
other under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80
no other files in tarball
Nov 26 12:44:25 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 439.622 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 443.513 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 5.69 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 4.65 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 8.79 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 8.63 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.32 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.31 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7888.23 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7918.26 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-31074.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Nov 26, 2024

Just to be sure, let's try this on zen3 as well.

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80

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riscv-eessi-io-bot bot commented Nov 26, 2024

Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-mc-aws (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

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Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-mc-azure (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 26, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen3 and accelerator nvidia/cc80 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.11/pr_828/31092

date job status comment
Nov 26 14:23:31 UTC 2024 submitted job id 31092 awaits release by job manager
Nov 26 14:24:22 UTC 2024 released job awaits launch by Slurm scheduler
Nov 26 14:25:27 UTC 2024 running job 31092 is running
Nov 26 14:43:10 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-31092.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1732631441.tar.gzsize: 0 MiB (45 bytes)
entries: 0
modules under 2023.06/software/linux/x86_64/amd/zen3/accel/nvidia/cc80/modules/all
no module files in tarball
software under 2023.06/software/linux/x86_64/amd/zen3/accel/nvidia/cc80/software
no software packages in tarball
other under 2023.06/software/linux/x86_64/amd/zen3/accel/nvidia/cc80
no other files in tarball
Nov 26 14:43:10 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 521.807 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 525.997 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 2.41 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 2.37 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 5.81 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 5.45 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 0.29 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 0.24 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen3-node+default
P: bandwidth: 14355.42 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen3-node+default
P: bandwidth: 14422.81 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-31092.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Nov 30, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge
    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Nov 30, 2024

error: easystacks/software.eessi.io/2023.06/accel/nvidia/eessi-2023.06-eb-4.9.4-2023b-CUDA.yml: patch does not apply

Unable to download or merge changes between the source branch and the destination branch.
Tip: This can usually be resolved by syncing your branch and resolving any merge conflicts.

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bedroge commented Nov 30, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

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bedroge commented Dec 2, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Dec 2, 2024

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen2 and accelerator nvidia/cc80 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.12/pr_828/32263

date job status comment
Dec 02 13:19:55 UTC 2024 submitted job id 32263 awaits release by job manager
Dec 02 13:20:50 UTC 2024 released job awaits launch by Slurm scheduler
Dec 02 13:21:52 UTC 2024 running job 32263 is running
Dec 02 14:19:17 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-32263.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1733147780.tar.gzsize: 29 MiB (30758058 bytes)
entries: 739
modules under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/modules/all
GROMACS/2024.4-foss-2023b-CUDA-12.4.0.lua
software under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/software
GROMACS/2024.4-foss-2023b-CUDA-12.4.0
other under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80
no other files in tarball
Dec 02 14:19:17 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 58.56 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 58.499 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 57.988 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 436.298 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 439.389 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 4.71 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 4.73 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 9.01 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 8.62 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.31 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.38 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7775.54 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7893.15 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-32263.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Dec 2, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80

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Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

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Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

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Updates by the bot instance eessi-bot-riscv (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

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    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 accel:nvidia/cc80 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 accelerator:nvidia/cc80 resulted in:

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New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen2 and accelerator nvidia/cc80 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.12/pr_828/32264

date job status comment
Dec 02 14:21:30 UTC 2024 submitted job id 32264 awaits release by job manager
Dec 02 14:22:21 UTC 2024 released job awaits launch by Slurm scheduler
Dec 02 14:23:23 UTC 2024 running job 32264 is running
Dec 02 15:20:50 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-32264.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1733151476.tar.gzsize: 29 MiB (30757345 bytes)
entries: 739
modules under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/modules/all
GROMACS/2024.4-foss-2023b-CUDA-12.4.0.lua
software under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/software
GROMACS/2024.4-foss-2023b-CUDA-12.4.0
other under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80
no other files in tarball
Dec 02 15:20:50 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 58.569 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 58.163 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 58.643 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 440.035 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen2-node+default
P: perf: 448.29 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 4.74 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 4.66 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 9.11 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 13.34 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.32 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen2-node+default
P: latency: 0.31 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7871.95 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen2-node+default
P: bandwidth: 7854.79 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-32264.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Dec 02 16:43:35 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen2-1733151476.tar.gz to S3 bucket succeeded

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bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 accel:nvidia/cc80 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 accelerator:nvidia/cc80 resulted in:

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New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen3 and accelerator nvidia/cc80 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.12/pr_828/32265

date job status comment
Dec 02 15:46:04 UTC 2024 submitted job id 32265 awaits release by job manager
Dec 02 15:46:55 UTC 2024 released job awaits launch by Slurm scheduler
Dec 02 15:52:58 UTC 2024 running job 32265 is running
Dec 02 16:40:12 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-32265.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1733156452.tar.gzsize: 29 MiB (30765357 bytes)
entries: 739
modules under 2023.06/software/linux/x86_64/amd/zen3/accel/nvidia/cc80/modules/all
GROMACS/2024.4-foss-2023b-CUDA-12.4.0.lua
software under 2023.06/software/linux/x86_64/amd/zen3/accel/nvidia/cc80/software
GROMACS/2024.4-foss-2023b-CUDA-12.4.0
other under 2023.06/software/linux/x86_64/amd/zen3/accel/nvidia/cc80
no other files in tarball
Dec 02 16:40:12 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.4-foss-2023b /b2b72766 @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 72.454 ns/day (r:0, l:None, u:None)
[ OK ] ( 2/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.3-foss-2023b /d2fe4ce3 @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 72.43 ns/day (r:0, l:None, u:None)
[ OK ] ( 3/13) EESSI_GROMACS %benchmark_info=HECBioSim/Crambin %nb_impl=cpu %scale=1_node %module_name=GROMACS/2024.1-foss-2023b /02920241 @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 72.724 ns/day (r:0, l:None, u:None)
[ OK ] ( 4/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 525.085 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 5/13) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen3-node+default
P: perf: 535.543 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 6/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 2.43 us (r:0, l:None, u:None)
[ OK ] ( 7/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 2.31 us (r:0, l:None, u:None)
[ OK ] ( 8/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 5.58 us (r:0, l:None, u:None)
[ OK ] ( 9/13) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 5.45 us (r:0, l:None, u:None)
[ OK ] (10/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 0.24 us (r:0, l:None, u:None)
[ OK ] (11/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen3-node+default
P: latency: 0.22 us (r:0, l:None, u:None)
[ OK ] (12/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen3-node+default
P: bandwidth: 14427.57 MB/s (r:0, l:None, u:None)
[ OK ] (13/13) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen3-node+default
P: bandwidth: 14358.26 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 13/13 test case(s) from 13 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-32265.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Dec 02 16:43:17 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen3-1733156452.tar.gz to S3 bucket succeeded

@ocaisa ocaisa added the bot:deploy Ask bot to deploy missing software installations to EESSI label Dec 2, 2024
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@ocaisa ocaisa merged commit 9052eb2 into EESSI:2023.06-software.eessi.io Dec 2, 2024
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eessi-bot bot commented Dec 2, 2024

PR merged! Moved ['/project/def-users/SHARED/jobs/2024.11/pr_828/31074', '/project/def-users/SHARED/jobs/2024.11/pr_828/31092', '/project/def-users/SHARED/jobs/2024.11/pr_828/31873', '/project/def-users/SHARED/jobs/2024.12/pr_828/32263', '/project/def-users/SHARED/jobs/2024.12/pr_828/32264', '/project/def-users/SHARED/jobs/2024.12/pr_828/32265'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.12.02

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PR merged! Moved [] to /home/eessibot/shared/trash_bin/EESSI/software-layer/2024.12.02

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eessi-bot bot commented Dec 2, 2024

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.12.02

@bedroge bedroge deleted the gromacs_2024.4_cuda branch December 2, 2024 18:58
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