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{2023.06}[foss/2021b] OpenFoam v2112 #338

{2023.06}[foss/2021b] OpenFoam v2112

{2023.06}[foss/2021b] OpenFoam v2112 #338

# documentation: https://help.github.com/en/articles/workflow-syntax-for-github-actions
name: Tests for eessi_container.sh script
on: [push, pull_request, workflow_dispatch]
permissions:
contents: read # to fetch code (actions/checkout)
jobs:
eessi_container_script:
runs-on: ubuntu-20.04
strategy:
fail-fast: false
matrix:
SCRIPT_TEST:
- help
- listrepos_default
- listrepos_custom
- run
- shell
- container
- resume
# FIXME disabled because '--access rw' is not working in CI environment
#- readwrite
#- save
steps:
- name: Check out software-layer repository
uses: actions/checkout@93ea575cb5d8a053eaa0ac8fa3b40d7e05a33cc8 # v3.1.0
- name: install Apptainer
run: |
./install_apptainer_ubuntu.sh
- name: Collect info on test environment
run: |
mount
df -h
- name: Test eessi_container.sh script
run: |
test_cmd="cat /etc/os-release"
out_pattern="Debian GNU/Linux 11"
if [[ ${{matrix.SCRIPT_TEST}} == 'help' ]]; then
./eessi_container.sh --help
# test use of --list-repos without custom repos.cfg
elif [[ ${{matrix.SCRIPT_TEST}} == 'listrepos_default' ]]; then
outfile=out_listrepos.txt
./eessi_container.sh --verbose --list-repos | tee ${outfile}
grep "EESSI-pilot" ${outfile}
# test use of --list-repos with custom repos.cfg
elif [[ ${{matrix.SCRIPT_TEST}} == 'listrepos_custom' ]]; then
outfile=out_listrepos.txt
outfile2=out_listrepos_2.txt
mkdir -p ${PWD}/cfg
echo "[EESSI/20AB.CD]" > cfg/repos.cfg
echo "repo_version = 20AB.CD" >> cfg/repos.cfg
echo "[EESSI/20HT.TP]" >> cfg/repos.cfg
echo "repo_version = 20HT.TP" >> cfg/repos.cfg
./eessi_container.sh --verbose --list-repos | tee ${outfile}
grep "EESSI-pilot" ${outfile}
export EESSI_REPOS_CFG_DIR_OVERRIDE=${PWD}/cfg
./eessi_container.sh --verbose --list-repos | tee ${outfile2}
grep "[EESSI/2023.02]" ${outfile2}
# test use of --mode run
elif [[ ${{matrix.SCRIPT_TEST}} == 'run' ]]; then
outfile=out_run.txt
echo "${test_cmd}" > test_script.sh
chmod u+x test_script.sh
export SINGULARITY_BIND="$PWD:/test"
./eessi_container.sh --verbose --mode run /test/test_script.sh | tee ${outfile}
grep "${out_pattern}" ${outfile}
# test use of --mode shell
elif [[ ${{matrix.SCRIPT_TEST}} == 'shell' ]]; then
outfile=out_shell.txt
./eessi_container.sh --verbose --mode shell <<< "${test_cmd}" 2>&1 | tee ${outfile}
grep "${out_pattern}" ${outfile}
# test use of --container option, using a totally different container;
# cfr. https://github.com/easybuilders/easybuild-containers
elif [[ ${{matrix.SCRIPT_TEST}} == 'container' ]]; then
outfile=out_container.txt
container="docker://ghcr.io/eessi/build-node:debian10"
./eessi_container.sh --verbose --container ${container} --mode shell <<< "${test_cmd}" 2>&1 | tee ${outfile}
grep "Debian GNU/Linux 10" ${outfile}
# test use of '--access rw' to get write access in container
elif [[ ${{matrix.SCRIPT_TEST}} == 'readwrite' ]]; then
outfile=out_readwrite.txt
fn="test_${RANDOM}.txt"
echo "touch /cvmfs/pilot.eessi-hpc.org/${fn}" > test_script.sh
chmod u+x test_script.sh
export SINGULARITY_BIND="$PWD:/test"
./eessi_container.sh --verbose --access rw --mode run /test/test_script.sh > ${outfile}
tmpdir=$(grep "\-\-resume" ${outfile} | sed "s/.*--resume \([^']*\).*/\1/g")
# note: must use '--access rw' again here, since touched file is in overlay upper dir
./eessi_container.sh --verbose --resume ${tmpdir} --access rw --mode shell <<< "ls -l /cvmfs/pilot.eessi-hpc.org/${fn}" > ${outfile}
grep "/cvmfs/pilot.eessi-hpc.org/${fn}$" $outfile
# test use of --resume
elif [[ ${{matrix.SCRIPT_TEST}} == 'resume' ]]; then
outfile=out_resume.txt
./eessi_container.sh --verbose --mode shell <<< "${test_cmd}" > ${outfile}
tmpdir=$(grep "\-\-resume" ${outfile} | sed "s/.*--resume \([^']*\).*/\1/g")
rm -f ${outfile}
# make sure that container image exists
test -f ${tmpdir}/ghcr.io_eessi_build_node_debian11.sif || (echo "Container image not found in ${tmpdir}" >&2 && ls ${tmpdir} && exit 1)
./eessi_container.sh --verbose --resume ${tmpdir} --mode shell <<< "${test_cmd}" > ${outfile}
cat ${outfile}
grep "Resuming from previous run using temporary storage at ${tmpdir}" ${outfile}
grep "${out_pattern}" ${outfile}
# test use of --save (+ --resume)
elif [[ ${{matrix.SCRIPT_TEST}} == 'save' ]]; then
outfile=out_save.txt
fn="test_${RANDOM}.txt"
test_cmd="touch /cvmfs/pilot.eessi-hpc.org/${fn}"
./eessi_container.sh --verbose --mode shell --access rw --save test-save.tar <<< "${test_cmd}" 2>&1 | tee ${outfile}
rm -f ${outfile}
./eessi_container.sh --verbose --mode shell --access rw --resume test-save.tar <<< "ls -l /cvmfs/pilot.eessi-hpc.org/${fn}" > ${outfile}
grep "/cvmfs/pilot.eessi-hpc.org/${fn}$" $outfile
tar tfv test-save.tar | grep "overlay-upper/${fn}"
else
echo "Unknown test case: ${{matrix.SCRIPT_TEST}}" >&2
exit 1
fi