Merge pull request #3 from rajeeja/master

o Fix pre-commit to get actions a green check :)

candle/data_utils.py

@@ -1,8 +1,9 @@
 from __future__ import absolute_import
 
+from typing import List
+
 import numpy as np
 import pandas as pd
-from typing import List
 
 # Adding conditional import for compatibility between
 # sklearn versions
@@ -832,7 +833,7 @@ def load_Xy_data_noheader(
     classes: int,
     usecols: List = None,
     scaling: str = None,
-    dtype=DEFAULT_DATATYPE
+    dtype=DEFAULT_DATATYPE,
 ):
     """
     Load training and testing data from the files specified, with the first

candle/helper_utils.py

@@ -11,7 +11,9 @@
 from .file_utils import get_file
 
 
-def fetch_file(link: str, subdir: str, unpack: bool = False, md5_hash: str = None) -> str:
+def fetch_file(
+    link: str, subdir: str, unpack: bool = False, md5_hash: str = None
+) -> str:
     """
     Convert URL to file path and download the file if it is not already
     present in spedified cache.

candle/uq_utils.py

@@ -48,7 +48,7 @@ def generate_index_distribution(
     :param Dict params: Contains the keywords that control the behavior of the function \
         (uq_train_fr, uq_valid_fr, uq_test_fr for fraction specification, \
         uq_train_vec, uq_valid_vec, uq_test_vec for block list specification, and \
-        uq_train_bks, uq_valid_bks, uq_test_bks for block number specification) 
+        uq_train_bks, uq_valid_bks, uq_test_bks for block number specification)
 
     :return: Tuple of numpy arrays
 

candle/viz_utils.py

@@ -168,7 +168,7 @@ def plot_2d_density_sigma_vs_error(sigma, yerror, method=None, figprefix=None):
 
 def plot_histogram_error_per_sigma(sigma, yerror, method=None, figprefix=None):
     """
-    Functionality to plot a 1D histogram of the distribution of computed errors 
+    Functionality to plot a 1D histogram of the distribution of computed errors
     (i.e. values of observed - predicted) observed
     for specific values of standard deviations computed. The range of
     standard deviations computed is split in xbins values and the

setup.py

@@ -24,6 +24,7 @@
         "scipy",
         "patsy",
         "statsmodels",
+        "protobuf==3.20.0",
     ],
     setup_requires=["pytest-runner", "flake8"],
     tests_requires=["pytest"],