Skip to content

Commit

Permalink
Updating workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7 from 0.1.…
Browse files Browse the repository at this point in the history 
…2 to 0.1.3
  • Loading branch information
planemo-autoupdate committed Apr 1, 2024
1 parent 0094cc4 commit d0c6444
Show file tree
Hide file tree
Showing 2 changed files with 25 additions and 110 deletions.
5 changes: 5 additions & 0 deletions workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/CHANGELOG.md
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,10 @@
# Changelog

## [0.1.3] 2024-04-01

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`

## [0.1.2] 2024-03-04

### Automatic update
Expand Down
130 changes: 20 additions & 110 deletions workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/Scaffolding-BioNano-VGP7.ga
View file
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@
],
"format-version": "0.1",
"license": "CC-BY-4.0",
"release": "0.1.2",
"release": "0.1.3",
"name": "Scaffolding-BioNano-VGP7",
"steps": {
"0": {
Expand Down Expand Up @@ -142,12 +142,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Parse parameter value",
"name": "input1"
}
],
"inputs": [],
"label": null,
"name": "Parse parameter value",
"outputs": [
Expand Down Expand Up @@ -187,10 +182,6 @@
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
},
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
Expand Down Expand Up @@ -242,20 +233,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Bionano Hybrid Scaffold",
"name": "bionano_cmap"
},
{
"description": "runtime parameter for tool Bionano Hybrid Scaffold",
"name": "conflict_resolution"
},
{
"description": "runtime parameter for tool Bionano Hybrid Scaffold",
"name": "ngs_fasta"
}
],
"inputs": [],
"label": null,
"name": "Bionano Hybrid Scaffold",
"outputs": [
Expand Down Expand Up @@ -375,10 +353,6 @@
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
},
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
Expand Down Expand Up @@ -444,10 +418,6 @@
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
},
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
Expand Down Expand Up @@ -509,12 +479,7 @@
"output_name": "integer_param"
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
}
],
"inputs": [],
"label": null,
"name": "gfastats",
"outputs": [
Expand Down Expand Up @@ -567,12 +532,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "input_file"
}
],
"inputs": [],
"label": null,
"name": "gfastats",
"outputs": [
Expand Down Expand Up @@ -663,12 +623,7 @@
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Sort",
"name": "input"
}
],
"inputs": [],
"label": null,
"name": "Sort",
"outputs": [
Expand Down Expand Up @@ -698,7 +653,7 @@
},
"2": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
"content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
"errors": null,
"id": 2,
"input_connections": {
Expand All @@ -707,12 +662,7 @@
"output_name": "out_file1"
}
},
"inputs": [
{
"description": "runtime parameter for tool Text reformatting",
"name": "infile"
}
],
"inputs": [],
"label": null,
"name": "Text reformatting",
"outputs": [
Expand All @@ -732,15 +682,15 @@
"output_name": "outfile"
}
},
"tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0",
"tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1",
"tool_shed_repository": {
"changeset_revision": "12615d397df7",
"changeset_revision": "fbf99087e067",
"name": "text_processing",
"owner": "bgruening",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"code\": \"{total += $2; $3 = total}1\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "9.3+galaxy0",
"tool_version": "9.3+galaxy1",
"type": "tool",
"uuid": "69c7b2e7-5c82-49ec-8301-737e5ec1739b",
"when": null,
Expand All @@ -757,12 +707,7 @@
"output_name": "outfile"
}
},
"inputs": [
{
"description": "runtime parameter for tool Datamash",
"name": "in_file"
}
],
"inputs": [],
"label": null,
"name": "Datamash",
"outputs": [
Expand Down Expand Up @@ -807,12 +752,7 @@
"output_name": "outfile"
}
},
"inputs": [
{
"description": "runtime parameter for tool Add column",
"name": "input"
}
],
"inputs": [],
"label": null,
"name": "Add column",
"outputs": [
Expand Down Expand Up @@ -851,12 +791,7 @@
"output_name": "out_file"
}
},
"inputs": [
{
"description": "runtime parameter for tool Parse parameter value",
"name": "input1"
}
],
"inputs": [],
"label": null,
"name": "Parse parameter value",
"outputs": [
Expand Down Expand Up @@ -944,12 +879,7 @@
"output_name": "out1"
}
},
"inputs": [
{
"description": "runtime parameter for tool Compute",
"name": "input"
}
],
"inputs": [],
"label": null,
"name": "Compute",
"outputs": [
Expand Down Expand Up @@ -993,7 +923,7 @@
}
},
"tags": "",
"uuid": "8c62f0a6-3009-43d0-b986-5a7909c91474"
"uuid": "0d43f853-69ee-4f89-9a1d-50cfa45ec0fd"
},
"tool_id": null,
"type": "subworkflow",
Expand All @@ -1012,12 +942,7 @@
"output_name": "gfastats data for plotting"
}
},
"inputs": [
{
"description": "runtime parameter for tool Cut",
"name": "input"
}
],
"inputs": [],
"label": null,
"name": "Cut",
"outputs": [
Expand Down Expand Up @@ -1056,12 +981,7 @@
"output_name": "gfastats data for plotting"
}
},
"inputs": [
{
"description": "runtime parameter for tool Cut",
"name": "input"
}
],
"inputs": [],
"label": null,
"name": "Cut",
"outputs": [
Expand Down Expand Up @@ -1100,12 +1020,7 @@
"output_name": "out_file1"
}
},
"inputs": [
{
"description": "runtime parameter for tool Scatterplot with ggplot2",
"name": "input1"
}
],
"inputs": [],
"label": null,
"name": "Scatterplot with ggplot2",
"outputs": [
Expand Down Expand Up @@ -1158,12 +1073,7 @@
"output_name": "out_file1"
}
},
"inputs": [
{
"description": "runtime parameter for tool Scatterplot with ggplot2",
"name": "input1"
}
],
"inputs": [],
"label": null,
"name": "Scatterplot with ggplot2",
"outputs": [
Expand Down

0 comments on commit d0c6444

Please sign in to comment.