simplified the workflow and made regex more robust

Delphine-L · Aug 26, 2024 · c2e2497 · c2e2497
1 parent 425856c
commit c2e2497
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Showing 3 changed files with 74 additions and 270 deletions.
diff --git a/...ows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml b/...ows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9-tests.yml
@@ -9,7 +9,7 @@
     mito_scaff_names:
       asserts:
         has_text: 
-          text: "SCAFFOLD_82"
+          text: "scaffold_82"
     final decontaminated assembly:
       decompress: true
       asserts:
@@ -18,4 +18,4 @@
     contaminants_table:
       asserts:
         has_text: 
-          text: "SCAFFOLD_200"
+          text: "scaffold_200"