try balance genome wide

Delphine-L · Sep 14, 2023 · 9015332 · 9015332
1 parent fba00e7
commit 9015332
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflows/epigenetics/hic-hicup-cooler/hic-fastq-to-cool-hicup-cooler-tests.yml b/workflows/epigenetics/hic-hicup-cooler/hic-fastq-to-cool-hicup-cooler-tests.yml
@@ -16,12 +16,12 @@
           identifier: reverse
           location: https://github.com/bgruening/galaxytools/raw/master/tools/hicup/test-data/dataset2.fastq
           filetype: fastqsanger
-    genome name: hg19canon
+    genome name: hg19
     Restriction enzyme: A^AGCTT,HindIII
     No fill-in: 'false'
     minimum MAPQ: 30
     Bin size in bp: 1000000
-    Interactions to consider to calculate weights in normalization step: --cis-only
+    Interactions to consider to calculate weights in normalization step: ""
     region for matrix plotting: chr2:175,689,620-178,604,461
   outputs:
     HiCUP report (html):