Skip to content

Commit

Permalink
change root path from /species/ to species/
Browse files Browse the repository at this point in the history
  • Loading branch information
@Delphine-L
Delphine-L committed May 16, 2024
1 parent c22c882 commit 5b4b682
Show file tree
Hide file tree
Showing 6 changed files with 48 additions and 48 deletions.
18 changes: 9 additions & 9 deletions workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga
View file
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
"name": "Input parameter",
"outputs": [],
"position": {
"left": 0.0,
"left": 0,
"top": 312.8114201007775
},
"tool_id": null,
Expand Down Expand Up @@ -1549,7 +1549,7 @@
"post_job_actions": {
"RenameDatasetActionoutput": {
"action_arguments": {
"newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
"newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
},
"action_type": "RenameDatasetAction",
"output_name": "output"
Expand Down Expand Up @@ -1641,7 +1641,7 @@
"post_job_actions": {
"RenameDatasetActionoutput": {
"action_arguments": {
"newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
"newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
},
"action_type": "RenameDatasetAction",
"output_name": "output"
Expand Down Expand Up @@ -1688,7 +1688,7 @@
"post_job_actions": {
"RenameDatasetActionoutput": {
"action_arguments": {
"newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
"newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
},
"action_type": "RenameDatasetAction",
"output_name": "output"
Expand Down Expand Up @@ -1764,7 +1764,7 @@
"name": "Input parameter",
"outputs": [],
"position": {
"left": 0.0,
"left": 0,
"top": 1412.1079716128102
},
"tool_id": null,
Expand Down Expand Up @@ -1904,7 +1904,7 @@
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "0.1.1",
"type": "tool",
"uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
Expand Down Expand Up @@ -3643,7 +3643,7 @@
}
},
"tags": "",
"uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
"uuid": "5be181ed-8459-445e-897a-45decc054893"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -5027,6 +5027,6 @@
}
},
"tags": [],
"uuid": "faf8f363-3ccf-437e-ade1-8cb9e9e9191d",
"version": 11
"uuid": "a502deb4-a66c-450b-a235-5b4125126b38",
"version": 6
}
10 changes: 5 additions & 5 deletions workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1873,7 +1873,7 @@
"name": "Input parameter",
"outputs": [],
"position": {
"left": 0.0,
"left": 0,
"top": 1412.1079716128102
},
"tool_id": null,
Expand Down Expand Up @@ -2013,7 +2013,7 @@
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "0.1.1",
"type": "tool",
"uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
Expand Down Expand Up @@ -3752,7 +3752,7 @@
}
},
"tags": "",
"uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
"uuid": "e8ffe3b6-26b6-46e9-ae58-c5e7fde7bc29"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -5393,6 +5393,6 @@
}
},
"tags": [],
"uuid": "6d78aa3f-f071-4905-978f-66e56e4630a8",
"version": 10
"uuid": "cc8ebedd-cc3c-4087-84a1-a4ae29e84202",
"version": 6
}
16 changes: 8 additions & 8 deletions workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1809,7 +1809,7 @@
"post_job_actions": {
"RenameDatasetActionoutput": {
"action_arguments": {
"newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
"newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
},
"action_type": "RenameDatasetAction",
"output_name": "output"
Expand Down Expand Up @@ -1856,7 +1856,7 @@
"post_job_actions": {
"RenameDatasetActionoutput": {
"action_arguments": {
"newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
"newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
},
"action_type": "RenameDatasetAction",
"output_name": "output"
Expand Down Expand Up @@ -1903,7 +1903,7 @@
"post_job_actions": {
"RenameDatasetActionoutput": {
"action_arguments": {
"newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
"newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
},
"action_type": "RenameDatasetAction",
"output_name": "output"
Expand Down Expand Up @@ -1979,7 +1979,7 @@
"name": "Input parameter",
"outputs": [],
"position": {
"left": 0.0,
"left": 0,
"top": 1412.1079716128102
},
"tool_id": null,
Expand Down Expand Up @@ -2119,7 +2119,7 @@
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "0.1.1",
"type": "tool",
"uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
Expand Down Expand Up @@ -3858,7 +3858,7 @@
}
},
"tags": "",
"uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
"uuid": "b217526e-f8f5-491c-ab6a-252ad3359b89"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -5605,6 +5605,6 @@
}
},
"tags": [],
"uuid": "e0267f0a-11a1-416d-8da0-a0898ba6e214",
"version": 5
"uuid": "265b3c49-46fd-4429-823f-2951ae38a80b",
"version": 6
}
Loading

0 comments on commit 5b4b682

Please sign in to comment.