replace the blast database by the right one : Refseq mitochondrion

Delphine-L · Nov 2, 2023 · 59e7268 · 59e7268
1 parent e1bdf60
commit 59e7268
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga
@@ -300,7 +300,7 @@
                 "owner": "devteam",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"adv_opts\": {\"adv_opts_selector\": \"basic\", \"__current_case__\": 0}, \"blast_type\": \"blastn\", \"db_opts\": {\"db_opts_selector\": \"db\", \"__current_case__\": 0, \"database\": \"13apr2014-htgs\", \"histdb\": \"\", \"subject\": \"\"}, \"evalue_cutoff\": \"0.001\", \"output\": {\"out_format\": \"cols\", \"__current_case__\": 2, \"std_cols\": [\"qseqid\", \"sseqid\", \"length\", \"qstart\", \"qend\", \"evalue\"], \"ext_cols\": [\"qlen\"], \"ids_cols\": null, \"misc_cols\": [\"qcovs\", \"qcovhsp\"], \"tax_cols\": null}, \"query\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"adv_opts\": {\"adv_opts_selector\": \"basic\", \"__current_case__\": 0}, \"blast_type\": \"blastn\", \"db_opts\": {\"db_opts_selector\": \"db\", \"__current_case__\": 0, \"database\": [\"refseq_mitochondrion\"], \"histdb\": \"\", \"subject\": \"\"}, \"evalue_cutoff\": \"0.001\", \"output\": {\"out_format\": \"cols\", \"__current_case__\": 2, \"std_cols\": [\"qseqid\", \"sseqid\", \"length\", \"qstart\", \"qend\", \"evalue\"], \"ext_cols\": [\"qlen\"], \"ids_cols\": null, \"misc_cols\": [\"qcovs\", \"qcovhsp\"], \"tax_cols\": null}, \"query\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "2.10.1+galaxy2",
             "type": "tool",
             "uuid": "1737bad0-48d9-489e-9a45-d6f3d3fcb900",
@@ -627,6 +627,6 @@
     "tags": [
         "VGP_curated"
     ],
-    "uuid": "742bb06f-5b88-4b4c-8096-28c9fe4350d6",
-    "version": 13
+    "uuid": "96598e02-f97c-484a-bdde-b1fce1f3fafa",
+    "version": 14
 }