changed sed formulaa that was causing errors

Delphine-L · Oct 30, 2023 · 376b53f · 376b53f
1 parent 52c96ef
commit 376b53f
Showing 1 changed file with 17 additions and 7 deletions.
diff --git a/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga b/workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga
@@ -105,7 +105,12 @@
                     "output_name": "output"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Text transformation",
+                    "name": "infile"
+                }
+            ],
             "label": "lower to uppercase",
             "name": "Text transformation",
             "outputs": [
@@ -116,7 +121,7 @@
             ],
             "position": {
                 "left": 342.8125,
-                "top": 227.94921875
+                "top": 227.6796875
             },
             "post_job_actions": {
                 "ChangeDatatypeActionoutput": {
@@ -134,7 +139,7 @@
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"adv_opts\": {\"adv_opts_selector\": \"basic\", \"__current_case__\": 0}, \"code\": \"s/[a-z]/\\\\U&/g\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"adv_opts\": {\"adv_opts_selector\": \"basic\", \"__current_case__\": 0}, \"code\": \"/^>/! s/.*/\\\\U&/\", \"infile\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "1.1.1",
             "type": "tool",
             "uuid": "b9b3d9b9-1716-486d-b65c-b0fb196cbc01",
@@ -191,7 +196,12 @@
                     "output_name": "outfile"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Text transformation",
+                    "name": "infile"
+                }
+            ],
             "label": "hard-masking",
             "name": "Text transformation",
             "outputs": [
@@ -220,7 +230,7 @@
                 "owner": "bgruening",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"adv_opts\": {\"adv_opts_selector\": \"basic\", \"__current_case__\": 0}, \"code\": \"s/[a-z]/N/g\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"adv_opts\": {\"adv_opts_selector\": \"basic\", \"__current_case__\": 0}, \"code\": \"/^>/!s/[a-z]/N/g\", \"infile\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "1.1.1",
             "type": "tool",
             "uuid": "5089350b-c1a9-498a-9786-9864d484f77a",
@@ -653,6 +663,6 @@
     "tags": [
         "VGP_curated"
     ],
-    "uuid": "f05a0339-a2ed-4137-94f5-889578c39c3d",
-    "version": 7
+    "uuid": "2aeb8e6f-0fe3-445e-b540-5011d063a600",
+    "version": 9
 }