Update WF5_Data_Interpretation_Worklow_tests.yml

Delphine-L · Nov 21, 2024 · 30231f9 · 30231f9
1 parent 86f23f2
commit 30231f9
Showing 1 changed file with 56 additions and 11 deletions.
diff --git a/...omics/clinicalmp/clinicalmp-data-interpretation/WF5_Data_Interpretation_Worklow_tests.yml b/...omics/clinicalmp/clinicalmp-data-interpretation/WF5_Data_Interpretation_Worklow_tests.yml
@@ -22,26 +22,71 @@
       filetype: tabular
   outputs:
     MICROBIAL_TAXONOMY_TREE:
-      path: test-data/MICROBIAL_TAXONOMY_TREE.d3_hierarchy
+      asserts:
+        - that: has_text
+          text:  "id  name  root  children  kids  data"
     MICROBIAL_EC_PROTEINS_TREE:
-      path: test-data/MICROBIAL_EC_PROTEINS_TREE.d3_hierarchy
+      asserts:
+        - that: has_text
+          text: "id  name  children  kids   data"
     Microbial_EC_Terms_Output:
-      path: test-data/Microbial_EC_Terms_Output.tabular
+      asserts:
+        - that: has_text
+          text: "Peptide    Total Protein Count    EC Number"
     Microbial_GO_Terms_Output:
-      path: test-data/Microbial_GO_Terms_Output.tabular
+      asserts:
+        - that: has_text
+          text:  "Peptide    Total Protein Count    GO Term" 
     Microbial_InterPro_Outputs:
-      path: test-data/Microbial_InterPro_Outputs.tabular
+       asserts:
+        - that: has_text
+          text:  "Peptide    Total Protein Count    InterPro Code"
     Unipept_peptinfo_tsv:
-      path: test-data/Unipept_peptinfo_tsv.tabular
+       asserts:
+        - that: has_text
+          text:  "peptide	total_protein_count	ec_numbers"
     Human_Proteins:
-      path: test-data/Human_Proteins.tabular
+       asserts:
+        - that: has_text
+          text:  "Protein IDs	Majority protein IDs	Peptide counts (all)"
     Microbial_Proteins:
-      path: test-data/Microbial_Proteins.tabular
+       asserts:
+        - that: has_text
+          text:  "Protein IDs	Majority protein IDs	Peptide counts (all)"
     MICROBIAL_PROTEINS_VOLCANO_PLOT:
       path: test-data/MICROBIAL_PROTEINS_VOLCANO_PLOT.pdf
+       asserts:
+        - that: has_text
+          text:
+          "CreationDate
+          /ModDate
+          /Title
+          /Producer
+          /Creator"
     MICROBIAL_PROTEINS_COMPARISON:
-      path: test-data/MICROBIAL_PROTEINS_COMPARISON.pdf
+       asserts:
+        - that: has_text
+          text:
+          "CreationDate
+          /ModDate
+          /Title
+          /Producer
+          /Creator"
     HUMAN_PROTEINS_VOLCANO_PLOT:
-      path: test-data/HUMAN_PROTEINS_VOLCANO_PLOT.pdf
+       asserts:
+        - that: has_text
+          text:
+          "CreationDate
+          /ModDate
+          /Title
+          /Producer
+          /Creator"
     HUMAN_PROTEINS_COMPARISON:
-      path: test-data/HUMAN_PROTEINS_COMPARISON.pdf
+       asserts:
+        - that: has_text
+          text:
+          "CreationDate
+          /ModDate
+          /Title
+          /Producer
+          /Creator"