Releases: DataBiosphere/data-portal
v2.3.0
v2.2.0
v2.1.0
v2.0.0
What's Changed
- Updated guides and pipeline docs by @ekiernan in #927
- Methods registry new tools by @NoopDog in #932
- Updated matrices.md by @ekiernan in #934
- Allow the metadata index to search on a partial match of ontology. Resolves #931. by @frano-m in #940
- Metadata dictionary has incorrect graph restriction link when term and 'from' ontologies are different. Resolves #925. by @frano-m in #937
- Added batch correction to matrices.md by @ekiernan in #946
- Removed references to deprecated environments. Resolves #863. by @MillenniumFalconMechanic in #947
- Update default catalog in prod to dcp5. Resolves #942 by @NoopDog in #949
- Update dcp-updates.md by @ekiernan in #951
- Lk update fix by @ekiernan in #952
- Add examples section to Azul API page resolves #835 by @NoopDog in #955
- 957 matrix ux resolves #957 by @NoopDog in #959
- Button widget embeddable in markdown. #958. by @frano-m in #960
- Added survey tracking. Updated survey text. Resolves DB #1745. by @MillenniumFalconMechanic in #961
- Updated survey tracking trigger. Resolves #1745. by @MillenniumFalconMechanic in #962
- Added tracking to survey link. Resolves #1745. by @MillenniumFalconMechanic in #964
- Added hyphens in matrix names by @ekiernan in #965
- Lk terra tutorial update by @ekiernan in #973
- Lk terra tutorial update by @ekiernan in #975
- Updated links by @ekiernan in #977
- Updated default catalog to dcp6. Resolves #976. by @MillenniumFalconMechanic in #978
- Lk release 6 notes by @ekiernan in #980
- Removed preview text. Resolves #979. by @MillenniumFalconMechanic in #981
- remove hca pipelines header by @NoopDog in #985
- 982 update to remove preview by @NoopDog in #986
- 979 try2 no preview by @NoopDog in #988
- Lk exploring projects update by @ekiernan in #991
- 990 replaced uniform with standard in hero unit and description by @NoopDog in #992
- Add lungmap privacy doc by @NoopDog in #996
- Added LungMAP components. Resolves #938. by @MillenniumFalconMechanic in #993
- Updated privacy links. Resolves #994. by @MillenniumFalconMechanic in #998
- Updated LM prod config. Resolves #1828. by @MillenniumFalconMechanic in #999
- Update APIs page by @NoopDog in #1000
- 1003 prettier by @NoopDog in #1004
- Delete redundant .prettierrc and re-apply Prettier by @Arctenik in #1005
- Updated LM page titles. Resolves #1829. by @MillenniumFalconMechanic in #1007
- Added LM social share. #1001. by @MillenniumFalconMechanic in #1010
- Updated portal URL config. #1001. by @MillenniumFalconMechanic in #1012
- Removed pipelines from header. #1011. by @MillenniumFalconMechanic in #1013
- Lk spring ux study update by @ekiernan in #1014
- npm packages for #1015 by @NoopDog in #1016
- update default catalog for dcp7 by @NoopDog in #1018
- Update dcp-updates.md by @ekiernan in #1022
- Updated July 23 Release Notes by @ekiernan in #1026
- Add optional drop shadow for markdown images component. #1027. by @frano-m in #1028
- Add project links to dcp-updates.md by @Arctenik in #1029
- Added catgories and organized overview by @NoopDog in #1031
- Update bioturing browser for #1032 by @NoopDog in #1033
- 1021 methods by @NoopDog in #1034
- Create LungMAP version of browser not supported page. #1009. by @frano-m in #1019
- Updated prod default catalog to dcp8. Resolves #1037. by @MillenniumFalconMechanic in #1038
- Revert to dcp7 for #1042 by @NoopDog in #1043
- Update matrices.md by @ekiernan in #1045
- Fixed registry link. (#1046) by @MillenniumFalconMechanic in #1047
- Set default catalog to dcp8 for #1051 by @NoopDog in #1052
- Added Release 8 update by @ekiernan in #1041
- Move gene Pattern Notebook for #1044 by @NoopDog in #1055
- Add Terra to the analysis portals section. #1053. by @frano-m in #1057
- Lk contribution update by @ekiernan in #1056
- Show right nav outline for H2 only rather than H2 and H3. #1054. by @frano-m in #1060
- Remove any nofollow and noreferrer rel attributes site wide. Also add noopener. #1059. by @frano-m in #1061
- Initial dependabot config for #1017 by @NoopDog in #1062
- Bump snyk from 1.692.0 to 1.696.0 by @dependabot in #1069
- Remove snyk from package.json for #1074 by @NoopDog in #1075
- Bump GatsbyJS to the latest version. Resolves #948. by @frano-m in #1084
- Bump prettier from 1.19.1 to 2.4.0 by @dependabot in #1086
- Rerun prettier for #1087 by @NoopDog in #1089
- Bump core-js from 3.15.2 to 3.17.3 by @dependabot in #1085
- Remove twitter image from SEO. #1095. by @frano-m in #1096
- Bump prettier from 2.4.0 to 2.4.1 by @dependabot in #1103
- Update default catalog to dcp9 for #1080 by @NoopDog in #1104
- Update dcp-updates.md by @ekiernan in #1105
- Bump Gatsby to 3.14. #1130. by @frano-m in #1138
- Remove 'Organs' from landing page summary. #1139. by @frano-m in #1141
- Add workflow to test the build by @Arctenik in #1151
- Bump typescript from 4.4.2 to 4.4.4 by @dependabot in #1155
- Updated default catalog to dcp10. (#1157) by @MillenniumFalconMechanic in #1158
- added dcp 10 notes by @ekiernan in #1150
- Added lungmap prod dp Gitlab scirpt for #1162 by @NoopDog in #1163
- Removed release components. (#900) by @MillenniumFalconMechanic in #1172
- Bump utf-8-validate from 5.0.5 to 5.0.7 by @dependabot in #1160
- Bump rehype-react from 7.0.1 to 7.0.3 by @dependabot in #1146
- Bump bufferutil from 4.0.3 to 4.0.5 by @dependabot in #1159
- Install packages for typescript integration. by @frano-m in #1185
- Update default catalog to dcp11 by @NoopDog in #1194
- Bump eslint-plugin-jsx-a11y from 6.4.1 to 6.5.1 by @dependabot in #1197
- Bump prismjs from 1.24.1 to 1.25.0 by @dependabot in #1107
- Bump gatsby-plugin-react-svg from 3.0.1 to ...
Contributors
Assets 2
Update default catalog in production config to dcp4
| Ticket | Description |
|---|---|
| #922 | Make markdown tables scroll in mobile view. |
| #920 | Remove organ and organPart from filter |
| #917 | Add estimated turnaround time to analysis portal submission page |
| #911 | Update default catalog in production config to dcp4 |
| #910 | Add project short name to search |
| #907 | [BUG] Search by project title doesn't appear to work bug |
| #905 | Add Release notes for DCP3 release to data portal |
| #903 | Add "Exploring Project Matrices" page |
| #899 | Remove default filter from links to Data Browser |
| #891 | Remove (preview) catalog parameters from Data Browser links |
| #889 | Update Analysis Portals introduction text |
| #887 | Update catalog config for Data Portal prod environment for dcp3 update |
| #885 | Add publicationTitle to filter bar |
| #880 | Add GranatumX to data portal analysis portals |
| #878 | Remove unused HCA gitlab yaml files for prod and lower env |
| #874 | Fix "something went wrong installing the "sharp" module" on gitlab build |
| #873 | Debounce feedback form button |
| #860 | Use Azul's catalog endpoint to determine default catalog for environment |
| #859 | Use facet display names in search bar subheadings |
| #856 | Convert filter bar content filter to an accept list |
| #852 | Update copy to clipboard icon to the one used in the data browser |
| #851 | Apply body font style to left and right navigations |
| #850 | Bump GatsbyJS version to latest as well as other dependencies to remove security warnings |
| #849 | Bump nodejs version to latest in local and build scripts. |
| #847 | Upgrade gatsby from 2.24.91 to 2.31.0 |
Content Versioning, Slack Link
Tickets
Add version flag to content front matter and environments #697
Update "Join HCA slack" link #700
Fix button text positioning of "Show Required Fields Only" button #703
Update external links #709
Commits
be8ca14 Gatsby node refactor. Ordering metadata navigation by lowercase. #697.
8fbc028 Update external links. Resolves #709.
5787d82 Add version flag to content front matter and environments. Linting. Resolves #697.
ee5400e Match staging.
4b5934e Add version flag to content front matter and environments. Review of internal links. Resolves #697.
dd1ef5d Add version flag to content front matter and environments. Resolves #697.
713898a Update 'Join HCA slack' link. Resolves #700.
619e370 Fix button text positioning of 'Show Required Fields Only' button. Resolves #703.
Twitter Card, URL Encode Search Links
Tickets
Add ability for description front matter field and copy to meta twitter and og description tags if it exists #679
Add twitter summary card image to portal pages #691
Rename repository endpoints from Azul Service API for 2.0 Only #693
Commits
1227c62 Updated encoding of DB links. Resolves DB #1210.
96a1b2c Update qc-metrics.md
1314e18 trigger cgl-dev build on staging branch
1664166 cgl build script update
21c3c77 update gtm auth info for cgl dev env
1786bb3 update cgl deploy to use staging
2ca58c7 cgl dev env setup
b3d944d Add twitter summary card image to portal pages. Staging URL updated. Resolves #691.
c62adde Add ability for description front matter field and copy to meta twitter and og description tags if it exists. Resolves #679.
CSS Fix for Browser Not Supported Page
Metadata Dictionary Updates, Browser Not Supported Page, Hide "r" Release
Tickets
Add a checkbox to filter the display to only required metadata fields #609
On metadata dictionary move provenance an "core" sections to the bottom of the type outlines. #610
Dismissible banners for accepting cookies and saying this is a test environment come back after a while #645
Fix or configure away ESLint errors on build #656
Add browser not supported page #665
Implement social sharing cards #666
Fix portal npm security warnings #669
Hide release functionality #670
Commits
9d2766b Add browser not supported page. Added meta tags. Resolves #665.
1f627e5 Update publication
273e1a1 Implement social sharing cards. Resolves #666.
f017c0f Update header.js
85d82c7 Add 2nd level nav to 'March 2020 Release' in top nav so we can show both 'Datasets' and 'Documentation' options. Fix header render on prop update. Resolves #657.
81b785b Fix or configure away ESLint errors on build. Organogram bug fix. #656.
40ca7d6 Add a checkbox to filter the display to only required metadata fields. Bug fix. #609.
6193cbd Fix portal npm security warnings. Resolves #669.
52dc3c8 Minor UI updates. Resolves #609.
b7bfc10 Add a checkbox to filter the display to only required metadata fields. Filter state saved to local store. #609.
79cee7b Add a checkbox to filter the display to only required metadata fields. #609.
cbb34c7 Update header.js
6306b73 Hid release-related functionality. Resolves #670.
7664ce1 Add browser not supported page. Removed BNS page for IE9. Resolves #665.
f3f0b63 Add browser not supported page. Resolves #665.
46d6651 Updated contributor roles. Resolves #661.
c1f875b Add 2nd level nav to 'March 2020 Release' in top nav so we can show both 'Datasets' and 'Documentation' options. Fix bug in release nav. Resolves #657.
faf229e Updated destkop UI. Resolves #657.
069147a Add 2nd level nav to 'March 2020 Release' in top nav so we can show both 'Datasets' and 'Documentation' options. Resolves #657.
e6cc245 Fix or configure away ESLint errors on build. Resolves #656.
84e69a0 Updated acknowlegement page. Resolves #651.
024d179 Dismissible banners for accepting cookies and saying this is a test environment come back after a while. Resolves #645.
6bb80d4 On metadata dictionary move provenance an 'core' sections to the bottom of the type outlines. Resolves #610.
3378635 fix overivew page links
52f9479 Update overview.md
08ac956 Update methods.md
4fc57c6 Update methods.md
9afd5f8 Update methods.md
685d3e9 Update methods.md
c531f8c Update methods.md
04fb493 Update methods.md
10f6d53 Update methods.md
c014074 Update overview.md
a6a862f Update replicating-the-release-analysis.md
ccba34b Update working-with-release-files.md
07389ec Update working-with-release-files.md
1d4d3e9 Update working-with-release-files.md
13d035a Update methods.md
3e30e40 Update methods.md
6b45871 Added release contributors. Resolves #647.
2e68530 update dataset count on homepage
cc0a2e6 Update overview.md
47350ee Update overview.md
f831ebb Update methods.md
993ecd6 Update methods.md
2652293 Update working-with-release-files.md
b4f0c74 Update replicating-the-release-analysis.md
2ee3a65 Update replicating-the-release-analysis.md
3ddc580 Update working-with-release-files.md
8893447 Update working-with-release-files.md
3d704a9 Update working-with-release-files.md
cb0f110 Update replicating-the-release-analysis.md
d0d31a9 Update overview.md
eb31150 Update overview.md
178c266 Update overview.md
fc899fd update feedback text
1b51a28 rename acknowlegements link
d5f9f5a Update working-with-release-files.md
9c703ad Acknowledgements updates
26617dc rename attributions to acknowledgements
91620be Update feedback.md
4aaccca Update attributions.md
3f7a82d Update attributions.md
32452c7 Update feedback.md
5f6bcaf Update content/releases/2020-mar/attributions.md
6c82f61 Update content/releases/2020-mar/attributions.md
ef1fcf6 Update content/releases/2020-mar/attributions.md
f2dae14 Update content/releases/2020-mar/attributions.md
59e4df1 Some placeholder text for the acknowledgements page
5ec3048 Update replicating-the-release-analysis.md
0f4d8c3 Add files via upload
a1614a2 Add files via upload
2e636eb Delete 07_snapshot14_export.png
1867143 Add files via upload
1baaee0 Delete 07_snapshot14_export.png
bff4d81 Update replicating-the-release-analysis.md
3649897 Update replicating-the-release-analysis.md
a28927a Update methods.md
77d48a3 Update working-with-release-files.md
983807e Update working-with-release-files.md
9872b11 Update working-with-release-files.md
798ca30 Update working-with-release-files.md
fadcbbe Add files via upload
6523010 Add files via upload
c91bd56 Delete 13_SCP_add_study.png
acd6c34 Add files via upload
8a82f87 Delete 13_SCP_add_study.png
4433b91 Add files via upload
96c4c07 Delete 13_SCP_add_study.png
b154678 Update replicating-the-release-analysis.md
3b43b8b Add files via upload
bf88420 Update replicating-the-release-analysis.md
ab45f23 Add files via upload
ca18b4d Update replicating-the-release-analysis.md
7ec7deb Add files via upload
741f15a Update methods.md
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16192cc Update methods.md
4f7fd9e Update working-with-release-files.md
f4170f8 Update working-with-release-files.md
eb32674 Update working-with-release-files.md
64af237 Update replicating-the-release-analysis.md
6dcdffb Update methods.md
88502f8 Update methods.md
5bf1d87 Update methods.md
4f95310 Update methods.md
849ec15 Add space above image (below text?) when the image is in a list. Resolves #641.
7f2455c Adjust line height of portal text in markdown table (its currently too small). Resolves #640.
5b0256f Update working-with-release-files.md
dbf92a2 Update replicating-the-release-analysis.md
1a83a65 Update methods.md
eed84c5 Update working-with-release-files.md
7d26ff2 Update replicating-the-release-analysis.md
589dc55 Update methods.md
bc72e6d Update methods.md
98b5450 Update working-with-release-files.md
25464cb Update working-with-release-files.md
315ca7b Update methods.md
87a50ba Update methods.md
8c5cc39 Update replicating-the-release-analysis.md
cc1d678 Update replicating-the-release-analysis.md
4cc577e Update replicating-the-release-analysis.md
d59729d Update methods.md
8aba08d Update methods.md
6a04d69 Update methods.md
ff04ef9 Update working-with-release-files.md
d80286e Update working-with-release-files.md
f1d6c7b Update working-with-release-files.md
ac76730 Update working-with-release-files.md
11c3cd6 Update working-with-release-files.md
a8d8bfb Add files via upload
be54a48 Update working-with-release-files.md
63c2c70 Update replicating-the-release-analysis.md
6fa1fa8 Update replicating-the-release-analysis.md
c70c858 Update methods.md
96952a8 Add files via upload
c8f7cda Create JSON.MD
5ed07d6 Update methods.md
f39618a Update methods.md
c0bf38a Update methods.md
ca6ab08 Update replicating-the-release-analysis.md
f82e9e5 release overview text updates
9c728b1 Updated links to release.
8ed63b9 text updates
e5611a6 add back front matter to relase files doc
4136e83 add feedback and attributions pages
e74a365 mix merge conflicts in overiew
b9239ee merge in link-to-browser custom tag
8e2de73 Update working-with-release-files.md
59fedb7 Update working-with-release-files.md
71306ea Update working-with-release-files.md
1d37c74 Update replicating-the-hca-dcp-release-analysis.md
f0a9df7 Update replicating-the-hca-dcp-release-analysis.md
45e8029 Add files via upload
fc05a0a All linking back from portal to browser to respect the environment in markdown links. Resolves #636.
ebe77cd Update working-with-release-files.md
c5e3e82 Update working-with-release-files.md
e8c7409 Update working-with-release-files.md
da22d40 Update working-with-release-files.md
2448210 Update working-with-release-files.md
09227e1 Update methods.md
15aafff Update overview.md
e23246a Update overview.md
5cb0c01 Update overview.md
1442378 Adding back the front matter
05f276a Update replicating-the-hca-dcp-release-analysis.md
c0c916a Update replicating-the-hca-dcp-release-analysis.md
b722fda Update methods.md
af8ddf1 Update methods.md
a04b31f Update replicating-the-hca-dcp-release-analysis.md
092752d Update replicating-the-hca-dcp-release-analysis.md
066726b Update overview.md
39ca7a7 Update overview.md
4bd4868 creating _image directory for release content
296fb90 Update overview.md
1668ba5 Update methods.md
3ee9def Update methods.md
b84cc31 update release url
6a97292 add 2020 march release page stubs
84d5b14 Add release announce text
bd47930 Announce 'r' release on portal homepage implementation. Resolves #624.
Fix Metadata Links
Tickets
#484 Remove "improve this page" link from imported metadata pages
#509 Broken links in metadata section
#616 Prevent search engines from indexing lower environments
Commits
17f7597 Prevent search engines from indexing lower environments. Resolves #616. (#634)
f460ca0 comment out tufflehog for now as it is breaking the build
45eb473 Fixed broken metadata links. Resolves #509.
f7575b7 Remove the 'improve this page' link on the imported metadata content. Resolves #484. (#631)