chore: updated and ran prettier (#3409)

.prettierignore

@@ -17,3 +17,6 @@ build
 
 # dependencies
 node_modules
+
+# other (avoids breaking a link)
+app/components/common/MDXContent/hca-dcp/downloadBatchCorrectionWarning.mdx

.prettierrc.json

@@ -1 +1,3 @@
-{}
+{
+  "trailingComma": "es5"
+}

app/apis/azul/common/utils.ts

@@ -70,7 +70,7 @@ export function isNullOrUndefined(value: any): boolean {
  */
 export function processAggregatedOrArrayValue<
   T,
-  K extends KeyOfTypeStringOrNullArray<T>
+  K extends KeyOfTypeStringOrNullArray<T>,
 >(responseValues: T[], key: K): string[] {
   // Aggregate key values across response values.
   const values = aggregateResponseValues(
@@ -91,7 +91,7 @@ export function processAggregatedOrArrayValue<
  */
 export function processAggregatedBooleanOrArrayValue<
   T,
-  K extends KeyOfTypeBooleanOrNullArray<T>
+  K extends KeyOfTypeBooleanOrNullArray<T>,
 >(responseValues: T[], key: K): string[] {
   // Aggregate key values across response values.
   const values = aggregateResponseValues(
@@ -114,7 +114,7 @@ export function processAggregatedBooleanOrArrayValue<
  */
 export function processAggregatedNumberEntityValue<
   T,
-  K extends KeyOfTypeNumberOrNull<T>
+  K extends KeyOfTypeNumberOrNull<T>,
 >(responseValues: T[], key: K): number {
   // Aggregate key values across response values.
   return aggregateNumericalResponseValues(responseValues, key);
@@ -129,7 +129,7 @@ export function processAggregatedNumberEntityValue<
  */
 export function processEntityArrayValue<
   T,
-  K extends KeyOfTypeStringOrNullArray<T>
+  K extends KeyOfTypeStringOrNullArray<T>,
 >(responseValues: T[], key: K, label = LABEL.UNSPECIFIED): string[] {
   // Response values should be a singleton array; check for at least one value here.
   if (responseValues.length === 0) {
@@ -202,7 +202,7 @@ export function processNumberEntityValue<T, K extends KeyOfTypeNumberOrNull<T>>(
  */
 function aggregateNumericalResponseValues<
   T,
-  K extends KeyOfTypeNumberOrNull<T>
+  K extends KeyOfTypeNumberOrNull<T>,
 >(responseValues: T[], key: K): number {
   return responseValues
     .map((responseValue) => responseValue[key] as unknown as number)
@@ -217,7 +217,7 @@ function aggregateNumericalResponseValues<
  */
 function aggregateResponseValues<
   T,
-  K extends KeyOfTypeStringOrNullArray<T> | KeyOfTypeBooleanOrNullArray<T>
+  K extends KeyOfTypeStringOrNullArray<T> | KeyOfTypeBooleanOrNullArray<T>,
 >(responseValues: T[], key: K): StringOrNullArray | BooleanOrNullArray {
   return responseValues
     .filter((responseValue) => !!responseValue[key])

app/apis/catalog/anvil-catalog/common/utils.ts

@@ -61,7 +61,7 @@ export const getConsortiumTitle = (
 };
 
 export const anvilCatalogStudyInputMapper = <
-  StudyType extends AnVILCatalogStudyAny
+  StudyType extends AnVILCatalogStudyAny,
 >(
   input: StudyType
 ): StudyType => {

app/components/Detail/components/GeneratedMatricesTables/components/ArchivePreviewDialog/components/ArchivePreviewTable/archivePreviewTable.tsx

@@ -25,7 +25,7 @@ export interface ArchivePreviewTableProps {
  */
 function getArchivePreviewTableColumns<
   T extends RowData,
-  TData = unknown
+  TData = unknown,
 >(): ColumnDef<T, TData>[] {
   return [
     {

app/viewModelBuilders/azul/hca-dcp/common/viewModelBuilders.ts

@@ -1965,7 +1965,7 @@ export function getGeneratedMatricesActionsColumnDef<T>(): ColumnDef<T> {
  * @returns anatomical entity column def.
  */
 export function getGeneratedMatricesAnatomicalEntityColumnDef<
-  T
+  T,
 >(): ColumnDef<T> {
   return {
     accessorKey: HCA_DCP_CATEGORY_KEY.ORGAN,
@@ -1986,7 +1986,7 @@ export function getGeneratedMatricesAnatomicalEntityColumnDef<
  * @returns content description column def.
  */
 export function getGeneratedMatricesContentDescriptionColumnDef<
-  T
+  T,
 >(): ColumnDef<T> {
   return {
     accessorKey: HCA_DCP_CATEGORY_KEY.CONTENT_DESCRIPTION,
@@ -2059,7 +2059,7 @@ export function getGeneratedMatricesGenusSpeciesColumnDef<T>(): ColumnDef<T> {
  * @returns library construction method column def.
  */
 export function getGeneratedMatricesLibraryConstructionMethodColumnDef<
-  T
+  T,
 >(): ColumnDef<T> {
   return {
     accessorKey: HCA_DCP_CATEGORY_KEY.LIBRARY_CONSTRUCTION_METHOD,
@@ -2080,7 +2080,7 @@ export function getGeneratedMatricesLibraryConstructionMethodColumnDef<
  * @returns matrix cell count column def.
  */
 export function getGeneratedMatricesMatrixCellCountColumnDef<
-  T
+  T,
 >(): ColumnDef<T> {
   return {
     accessorKey: HCA_DCP_CATEGORY_KEY.MATRIX_CELL_COUNT,
@@ -2424,12 +2424,15 @@ export const renderWhenUnAuthenticated = (
  * @returns total cells from cellSuspensions.
  */
 function rollUpTotalCells(entityResponse: EntityResponse): number | null {
-  return entityResponse.cellSuspensions.reduce((acc, { totalCells }) => {
-    if (totalCells) {
-      acc = (acc ?? 0) + totalCells;
-    }
-    return acc;
-  }, null as null | number);
+  return entityResponse.cellSuspensions.reduce(
+    (acc, { totalCells }) => {
+      if (totalCells) {
+        acc = (acc ?? 0) + totalCells;
+      }
+      return acc;
+    },
+    null as null | number
+  );
 }
 
 /**

files/ncpi-catalog/build-ncpi-catalog.ts

@@ -25,9 +25,8 @@ async function buildCatalog(): Promise<void> {
     SOURCE_FIELD_TYPE
   )) as PlatformStudy[];
 
-  const ncpiPlatformStudies = await buildNCPIPlatformStudies(
-    platformStudyStubs
-  );
+  const ncpiPlatformStudies =
+    await buildNCPIPlatformStudies(platformStudyStubs);
 
   const ncpiCatalogPlatforms = buildNCPICatalogPlatforms(ncpiPlatformStudies);
 

package.json

@@ -83,10 +83,10 @@
     "babel-loader": "^8.2.5",
     "eslint": "^8.33.0",
     "eslint-config-next": "^15.1.2",
-    "eslint-config-prettier": "^8.6.0",
+    "eslint-config-prettier": "^9.1.0",
     "eslint-plugin-eslint-comments": "^3.2.0",
     "eslint-plugin-jsdoc": "^50.6.1",
-    "eslint-plugin-prettier": "^4.2.1",
+    "eslint-plugin-prettier": "^5.2.1",
     "eslint-plugin-react-hooks": "^5.1.0",
     "eslint-plugin-sonarjs": "^3.0.1",
     "eslint-plugin-sort-destructure-keys": "^2.0.0",
@@ -97,8 +97,8 @@
     "jest": "^29.4.1",
     "jest-environment-jsdom": "^29.4.1",
     "next-mdx-remote": "^4.2.0",
-    "prettier": "^2.8.3",
-    "prettier-plugin-organize-imports": "^3.2.2",
+    "prettier": "^3.4.2",
+    "prettier-plugin-organize-imports": "^4.1.0",
     "typescript": "^5.7.2",
     "url-loader": "^4.1.1"
   },

site-config/anvil-catalog/dev/common/utils.ts

@@ -38,6 +38,6 @@ function buildMenuItems(
     ...menuItem,
     menuItems: buildMenuItems(menuItems, parameter, true),
     url: replaceParameters(url, parameter),
-    visible: isSubMenu ? visible ?? VISIBLE.MD_DOWN : visible,
+    visible: isSubMenu ? (visible ?? VISIBLE.MD_DOWN) : visible,
   }));
 }