Reproducibility in Bioinformatics

A short presentation (1/2 h) or course (probably 1.5 h) given for a group of molecular biotechnology master students in Heidelberg, Germany.

Have a look at https://dkfz-odcf.github.io/bioinformatic-reproducibility-course/ to see the presentation.

Build Instructions

• Clone the repository

  git clone https://github.com/DKFZ-ODCF/bioinformatic-reproducibility-course.git

• Build the presentation

  cd bioinformatic-reproducibility-course
  ./gradlew asciidoctor

• Find the HTML5 and PDF products in the build/ directory.

Publishing GH Pages

The repo uses the gradle-git-publish plugin to publish an AsciiDoctor document to Github Pages.

You need a personal authentication token from Github. Go to your profile image (top-left) and choose "settings" and on the right select "developer settings". Proceed to "Personal access tokens" and or choose a token that has the ticks below "repo" and "admin:repo_hook" set.

You can publish your changes to the gh-pages branch with

./gradlew gitPublishPush

Versions

• 2.x.y: To be held on the 6th of March, 2019
• 1.0.0: Held 18th July 2018

License

Dieses Werk ist lizenziert unter einer Creative Commons Namensnennung - Nicht-kommerziell - Weitergabe unter gleichen Bedingungen 4.0 International Lizenz.