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119 changes: 119 additions & 0 deletions
119
...xt-data-profiler/src/main/java/org/irodsext/dataprofiler/IrodsextDataProfilerService.java
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| /** | ||
| * | ||
| */ | ||
| package org.irodsext.dataprofiler; | ||
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| import org.irods.jargon.core.connection.IRODSAccount; | ||
| import org.irods.jargon.core.exception.DataNotFoundException; | ||
| import org.irods.jargon.core.exception.JargonException; | ||
| import org.irods.jargon.core.pub.IRODSAccessObjectFactory; | ||
| import org.irods.jargon.core.pub.domain.Collection; | ||
| import org.irods.jargon.core.pub.domain.DataObject; | ||
| import org.irods.jargon.extensions.dataprofiler.DataProfile; | ||
| import org.irods.jargon.extensions.dataprofiler.DataProfileService; | ||
| import org.irods.jargon.extensions.dataprofiler.DataProfilerSettings; | ||
| import org.irods.jargon.extensions.datatyper.DataTypeResolutionService; | ||
| import org.slf4j.Logger; | ||
| import org.slf4j.LoggerFactory; | ||
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| /** | ||
| * @author Mike Conway - NIEHS | ||
| * | ||
| */ | ||
| public class IrodsextDataProfilerService extends DataProfileService { | ||
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| public static final Logger log = LoggerFactory.getLogger(IrodsextDataProfilerService.class); | ||
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| /** | ||
| * @param defaultDataProfilerSettings | ||
| * @param dataTypeResolutionService | ||
| * @param irodsAccessObjectFactory | ||
| * @param irodsAccount | ||
| */ | ||
| public IrodsextDataProfilerService(DataProfilerSettings defaultDataProfilerSettings, | ||
| DataTypeResolutionService dataTypeResolutionService, IRODSAccessObjectFactory irodsAccessObjectFactory, | ||
| IRODSAccount irodsAccount) { | ||
| super(defaultDataProfilerSettings, dataTypeResolutionService, irodsAccessObjectFactory, irodsAccount); | ||
| } | ||
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| /* | ||
| * (non-Javadoc) | ||
| * | ||
| * @see org.irods.jargon.extensions.dataprofiler.DataProfileService# | ||
| * retrieveDataProfile(java.lang.String) | ||
| */ | ||
| @Override | ||
| public DataProfile retrieveDataProfile(String irodsAbsolutePath) throws DataNotFoundException, JargonException { | ||
| // TODO Auto-generated method stub | ||
| return null; | ||
| } | ||
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| /* | ||
| * (non-Javadoc) | ||
| * | ||
| * @see org.irods.jargon.extensions.dataprofiler.DataProfileService# | ||
| * retrieveDataProfile(java.lang.String, | ||
| * org.irods.jargon.extensions.dataprofiler.DataProfilerSettings) | ||
| */ | ||
| @Override | ||
| public DataProfile retrieveDataProfile(String irodsAbsolutePath, DataProfilerSettings dataProfilerSettings) | ||
| throws DataNotFoundException, JargonException { | ||
| // TODO Auto-generated method stub | ||
| return null; | ||
| } | ||
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| /* | ||
| * (non-Javadoc) | ||
| * | ||
| * @see org.irods.jargon.extensions.dataprofiler.DataProfileService# | ||
| * retrieveDataProfileForCollection(java.lang.String) | ||
| */ | ||
| @Override | ||
| public DataProfile<Collection> retrieveDataProfileForCollection(String irodsAbsolutePath) | ||
| throws DataNotFoundException, JargonException { | ||
| // TODO Auto-generated method stub | ||
| return null; | ||
| } | ||
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| /* | ||
| * (non-Javadoc) | ||
| * | ||
| * @see org.irods.jargon.extensions.dataprofiler.DataProfileService# | ||
| * retrieveDataProfileForCollection(java.lang.String, | ||
| * org.irods.jargon.extensions.dataprofiler.DataProfilerSettings) | ||
| */ | ||
| @Override | ||
| public DataProfile<Collection> retrieveDataProfileForCollection(String irodsAbsolutePath, | ||
| DataProfilerSettings dataProfilerSettings) throws DataNotFoundException, JargonException { | ||
| // TODO Auto-generated method stub | ||
| return null; | ||
| } | ||
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| /* | ||
| * (non-Javadoc) | ||
| * | ||
| * @see org.irods.jargon.extensions.dataprofiler.DataProfileService# | ||
| * retrieveDataProfileForDataObject(java.lang.String) | ||
| */ | ||
| @Override | ||
| public DataProfile<DataObject> retrieveDataProfileForDataObject(String irodsAbsolutePath) | ||
| throws DataNotFoundException, JargonException { | ||
| // TODO Auto-generated method stub | ||
| return null; | ||
| } | ||
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| /* | ||
| * (non-Javadoc) | ||
| * | ||
| * @see org.irods.jargon.extensions.dataprofiler.DataProfileService# | ||
| * retrieveDataProfileForDataObject(java.lang.String, | ||
| * org.irods.jargon.extensions.dataprofiler.DataProfilerSettings) | ||
| */ | ||
| @Override | ||
| public DataProfile<DataObject> retrieveDataProfileForDataObject(String irodsAbsolutePath, | ||
| DataProfilerSettings dataProfilerSettings) throws DataNotFoundException, JargonException { | ||
| // TODO Auto-generated method stub | ||
| return null; | ||
| } | ||
|
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| } |
9 changes: 9 additions & 0 deletions
9
irodsext-data-profiler/src/main/java/org/irodsext/dataprofiler/package-info.java
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| /** | ||
| * Data profiler associated with 'info' page functions of metalnx/irods-ext | ||
| * schema and conventions | ||
| * | ||
| * @author Mike Conway - NIEHS | ||
| * | ||
| */ | ||
| package org.irodsext.dataprofiler; |
76 changes: 76 additions & 0 deletions
76
...ata-profiler/src/test/java/org/irodsext/dataprofiler/IrodsextDataProfilerServiceTest.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,76 @@ | ||
| /** | ||
| * | ||
| */ | ||
| package org.irodsext.dataprofiler; | ||
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| import static org.junit.Assert.fail; | ||
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| import java.util.Properties; | ||
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| import org.irods.jargon.core.connection.JargonProperties; | ||
| import org.irods.jargon.core.connection.SettableJargonProperties; | ||
| import org.irods.jargon.core.pub.IRODSFileSystem; | ||
| import org.irods.jargon.testutils.IRODSTestSetupUtilities; | ||
| import org.irods.jargon.testutils.TestingPropertiesHelper; | ||
| import org.irods.jargon.testutils.filemanip.ScratchFileUtils; | ||
| import org.junit.After; | ||
| import org.junit.AfterClass; | ||
| import org.junit.Before; | ||
| import org.junit.BeforeClass; | ||
| import org.junit.Test; | ||
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| /** | ||
| * @author Mike Conway - NIEHS | ||
| * | ||
| */ | ||
| public class IrodsextDataProfilerServiceTest { | ||
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| private static Properties testingProperties = new Properties(); | ||
| private static TestingPropertiesHelper testingPropertiesHelper = new TestingPropertiesHelper(); | ||
| private static ScratchFileUtils scratchFileUtils = null; | ||
| public static final String IRODS_TEST_SUBDIR_PATH = "IrodsextDataProfilerServiceTest"; | ||
| private static IRODSTestSetupUtilities irodsTestSetupUtilities = null; | ||
| private static IRODSFileSystem irodsFileSystem; | ||
| private static JargonProperties jargonOriginalProperties = null; | ||
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| @BeforeClass | ||
| public static void setUpBeforeClass() throws Exception { | ||
| TestingPropertiesHelper testingPropertiesLoader = new TestingPropertiesHelper(); | ||
| testingProperties = testingPropertiesLoader.getTestProperties(); | ||
| scratchFileUtils = new ScratchFileUtils(testingProperties); | ||
| scratchFileUtils.clearAndReinitializeScratchDirectory(IRODS_TEST_SUBDIR_PATH); | ||
| irodsTestSetupUtilities = new IRODSTestSetupUtilities(); | ||
| irodsTestSetupUtilities.initializeIrodsScratchDirectory(); | ||
| irodsTestSetupUtilities.initializeDirectoryForTest(IRODS_TEST_SUBDIR_PATH); | ||
| irodsFileSystem = IRODSFileSystem.instance(); | ||
| SettableJargonProperties settableJargonProperties = new SettableJargonProperties( | ||
| irodsFileSystem.getJargonProperties()); | ||
| jargonOriginalProperties = settableJargonProperties; | ||
| } | ||
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| @AfterClass | ||
| public static void tearDownAfterClass() throws Exception { | ||
| irodsFileSystem.closeAndEatExceptions(); | ||
| } | ||
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| @Before | ||
| public void before() throws Exception { | ||
| // be sure that normal config is set up | ||
| irodsFileSystem.getIrodsSession().setJargonProperties(jargonOriginalProperties); | ||
| } | ||
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| @After | ||
| public void afterEach() throws Exception { | ||
| irodsFileSystem.closeAndEatExceptions(); | ||
| } | ||
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| /** | ||
| * Test method for | ||
| * {@link org.irodsext.dataprofiler.IrodsextDataProfilerService#retrieveDataProfile(java.lang.String, org.irods.jargon.extensions.dataprofiler.DataProfilerSettings)}. | ||
| */ | ||
| @Test | ||
| public void testRetrieveDataProfileStringDataProfilerSettings() { | ||
| fail("Not yet implemented"); | ||
| } | ||
|
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| } |