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@lundq163 lundq163 released this 26 Aug 23:03
· 62 commits to main since this release
3.4.1
2bafa6e
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What's Changed

  • Image overcropping issue in preBIBSNet resolved through implementation of SynthStrip by @LuciMoore to use a brain mask to determine the optimal axial cutting plane and Dockerfile updated by @madisoth to install SynthStrip in #124
  • Removal of all logic, flags, dependencies etc required for the former cropping method using robustfov. Additionally, because cropping is no longer age-dependent, a participants.tsv file is no longer required #124
  • Created attribute which writes out volumes.json by @tjhendrickson and fix for brain mask file name issue by @lundq163 in #121

Full Changelog: 3.4.0...3.4.1

Summary of major updates from prior pre-releases (see full details in history below) include:

  • Replaced previous models with new production models that now don't have chirality issues (uses the no Mirroring class and sets flipping=False when generating segmentations): 540 (T1+T2), 541 (T1-only), 542 (T2-only) by @lundq163
  • Remove chirality correction steps from postbibsnet by @LuciMoore in #114
  • Inclusion of volumes.tsv in final outputs containing total size of each region by @tjhendrickson

Contributors

tjhendrickson, LuciMoore, and 2 other contributors
Assets 2
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