Add MyST functionality (#102)

* add myst-parser

* add myst-nb

* added copyright

* remove awscli and markdown-it for ts

* add back aws-cli

* clean up env

book/_config.yml

@@ -1,9 +1,11 @@
 # Book settings
 # Learn more at https://jupyterbook.org/customize/config.html
 
-title: CryoCloud
-author: Mines Glaciology Laboratory, Colorado School of Mines
-logo: logo.png
+title :      CryoCloud
+author :     CryoCloud Team and Community, Colorado School of Mines
+logo :       logo.png
+copyright : "2022" # Goes in the footer
+
 only_build_toc_files: true
 
 parse:
@@ -30,11 +32,17 @@ parse:
     - colon_fence
     # Extras
     - html_image
+    - amsmath
+    - deflist
+    - html_admonition
+    - replacements
+    - smartquotes
+    - tasklist
 
 # Force re-execution of notebooks on each build.
 # See https://jupyterbook.org/content/execute.html
 execute:
-  execute_notebooks: 'off'
+  execute_notebooks: 'force'
 #  execute_notebooks: 'cache'
 #  exclude_patterns:
 #    - "**/dataintegration-1.ipynb"

conda/environment.yml

@@ -43,20 +43,21 @@ dependencies:
   - jupyterlab_pygments~=0.3.0 # To bring extension uptodate
   - jupytext~=1.16.1
   - nbdime~=4.0.1
+
   # JupyterBook Addons
   - sphinxcontrib-bibtex
-  # dashboards
-  - voila~=0.5
-
-  # JupyterBook packages
+  - markupsafe~=2.1.5
+  - myst-nb~=1.1.1
   - jupytext
   # For building Team Splashpage
   - cookiecutter
   # Dependencies of jinja-markdown
   - jinja2>=2.11
   - pygments>=2.6.1
-  - pymdown-extensions>=7.1 
-
+  - pymdown-extensions>=7.1
+  # dashboards
+  - voila~=0.5
+
   # Core scientific python stack
   - cython==0.29.32 # optimization, C API access
   - flox~=0.9.7 # optimization, xarray operations