v2.0 Beta 2: Whole-Colony Modeling of Escherichia coli

Release v2.0 goes with the "Whole-Colony Modeling of Escherichia coli" paper that is currently in review. The reviewers of this paper are the intended audience of this beta release. See the README for setup instructions and documentation.

From the previous beta release (v2.0-beta.1) for this paper, this release adds a command-line argument for controlling the frequency of simulation time points to the simulation script.

v2.0 Beta 1: Simulating Colonies of Whole-Cell Escherichia coli Models

Release v2.0 goes with the "Simulating Colonies of Whole-Cell Escherichia coli Models" paper that is currently in review. The reviewers of this paper are the intended audience of this beta release. See the README for setup instructions and documentation.

Science-2020-07-24

This release snapshot Science-2020-07-24 goes with the paper Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation published in Science, 24 July 2020.

See docs/README.md for info on setting up the Python 2.7 runtime environment to run this release.

(The next release will contain lots of work done since this snapshot forked off, and it runs on Python 3.8.)

Note that this release is copied from the release created by @1fish2 in the WholeCellEcoliRelease repository.