Reaction patch to remove incorrectly parsed reactions #211
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…into metabolism-redux
…ction.spreadsheets.JsonReader._decode_row in ParCa.
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Some EcoCyc reactions have the same metabolite on both sides, resulting in duplicate dict keys when we parse them with reconstruction.spreadsheets.JsonReader._decode_row. One example is https://ecocyc.org/ECOLI/NEW-IMAGE?object=RXN-12440.
The model can use them to "cheat" since they're not mass balanced, thereby constituting a mass/carbon generating reaction.
Ideally we'd create some test to see if all reactions are mass balanced at the end, but this'll do for now.