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Save States Patches + Misc. #153

Merged
merged 24 commits into from
Jul 5, 2022
Merged

Save States Patches + Misc. #153

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8831d67
Fixed duplicates in save_states config bug.
matt-wolff May 22, 2022
3758e46
Simplified ecoli_master_sim.py agent saving.
matt-wolff May 23, 2022
6917a9e
Replaced 'diffusion' w/ 'reaction_diffusion' in ecoli_engine_process.
matt-wolff May 23, 2022
73e13e4
Order save_times.
matt-wolff May 23, 2022
c675f26
Updated the vivarium save states.
matt-wolff May 23, 2022
fce79ed
Fixed colony saving so processes are not serialized.
matt-wolff May 23, 2022
d4f47cb
Regenerated colony_t4000.json
matt-wolff May 23, 2022
d150374
Updated vivarium-core requirements.
matt-wolff May 23, 2022
afac09e
Reverted doc/requirements.
matt-wolff May 23, 2022
665ca39
Include saved state time in random seed
U8NWXD May 24, 2022
d850cf3
Avoid serializing Unum in saved state
U8NWXD May 24, 2022
492dc42
Make sure requesters run when loading saved state
U8NWXD May 24, 2022
3cbdb24
Merge branch 'master' into save_patches
U8NWXD May 24, 2022
8a8a6c0
Initialize Exchange Data when Loading Saved Colony
U8NWXD May 25, 2022
0f29bc5
Avoid copying processes before retrieving inner states
U8NWXD May 28, 2022
da97254
Use Process Commands for Saving States
U8NWXD Jun 13, 2022
d4cab77
Upgrade stochastic-arrow to 0.5.0
U8NWXD Jun 16, 2022
548049d
Update EngineProcess to use pre_send_command()
U8NWXD Jun 17, 2022
e8c1d59
Stop Saving evolvers_ran and Extra Requester Run
U8NWXD Jun 17, 2022
b6a2b9d
Make binomial division deterministic
U8NWXD Jun 17, 2022
5e49cf1
Remove evolvers_ran from saved states
U8NWXD Jun 17, 2022
8976e2b
Fix tests
U8NWXD Jun 20, 2022
d9c4cf8
Upgrade vivarium core dependency
U8NWXD Jun 21, 2022
89a1d53
Merge branch 'master' into save_patches
U8NWXD Jul 5, 2022
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2 changes: 1 addition & 1 deletion data/colony_t4000.json
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2 changes: 1 addition & 1 deletion data/vivecoli_t10.json
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2 changes: 1 addition & 1 deletion data/vivecoli_t100.json
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2 changes: 1 addition & 1 deletion data/vivecoli_t1000.json
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